PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g35880.1
Common NameLOC4347644, OJ1439_F07.29, Os09g0527900, OsJ_30084, OSNPB_090527900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 212aa    MW: 23366.2 Da    PI: 6.3317
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g35880.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-08333434
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ +e+ ++ lfC  ++  lC++C ++ H
  LOC_Os09g35880.1  3 TICDVCESAPAVLFCVADEAALCRSCDEKVH 33
                      68**************************998 PP
2zf-B_box27.85e-095291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  LOC_Os09g35880.1 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                      6799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000214.24E-8345No hitNo description
PfamPF006437.0E-7342IPR000315B-box-type zinc finger
PROSITE profilePS501199.5275196IPR000315B-box-type zinc finger
SMARTSM003364.0E-115196IPR000315B-box-type zinc finger
PfamPF006434.6E-75291IPR000315B-box-type zinc finger
CDDcd000211.39E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCVAD EAALCRSCDE KVHMCNKLAR RHVRVGLADP NKVQRCDICE  60
NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQKD  120
PENRTDQKKA PHSVTKEQMA NHHNVSDDPA SDGNCDDQGN IDSKMIDLNM RPVRTHGQGS  180
NSQTQGVDVS VNNHDSPGVV PTCNFEREAN K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.101640.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379918180.0
Expression AtlasQ651Z9-
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g35880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g35880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221720.0AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651327.11e-157B-box zinc finger protein 18
SwissprotC0SVM52e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D3H9761e-156A0A0D3H976_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0B5L11e-156A0A0E0B5L1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IMN91e-156A0A0E0IMN9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QU521e-156A0A0E0QU52_ORYRU; Uncharacterized protein
TrEMBLB8BDX01e-156B8BDX0_ORYSI; Uncharacterized protein
TrEMBLQ651Z91e-156Q651Z9_ORYSJ; Os09g0527900 protein
STRINGORUFI09G18530.11e-156(Oryza rufipogon)
STRINGOS09T0527900-011e-156(Oryza sativa)
STRINGONIVA09G18230.11e-156(Oryza nivara)
STRINGOBART09G17210.11e-156(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-77DBB family protein