PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g35030.1
Common NameCBF3, DREB1A, ERF24, LOC4347620, Os09g0522200, OSJNOa273B05.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 239aa    MW: 25390.1 Da    PI: 4.8433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g35030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184999153
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  LOC_Os09g35030.1 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99
                      579******************9...6445**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1349100IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-155099IPR016177DNA-binding domain
PROSITE profilePS5103219.66450115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2450117IPR001471AP2/ERF domain
SMARTSM003801.5E-1350121IPR001471AP2/ERF domain
PRINTSPR003676.6E-55162IPR001471AP2/ERF domain
CDDcd000187.15E-1751117No hitNo description
PRINTSPR003676.6E-57591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MCGIKQEMSG ESSGSPCSSA SAERQHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA  60
GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGGAC CLNFADSAWL  120
LAVPRSYRTL ADVRHAVAEA VEDFFRRRLA DDALSATSSS STTPSTPRTD DDEESAATDG  180
DESSSPASDL AFELDVLSDM GWDLYYASLA QGMLMEPPSA ALGDDGDAIL ADVPLWSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.582620.0leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ64MA1
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g35030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g35030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009700.0AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds.
GenBankAK2876920.0AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence.
GenBankAP0068590.0AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankJQ8859560.0JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.11e-173dehydration-responsive element-binding protein 1A
SwissprotQ64MA11e-174DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0E0B5H21e-171A0A0E0B5H2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IMJ11e-171A0A0E0IMJ1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QU081e-171A0A0E0QU08_ORYRU; Uncharacterized protein
TrEMBLI6SBR01e-171I6SBR0_ORYSA; DRE-binding factor 1A
TrEMBLK7SPM11e-171K7SPM1_ORYSI; DRE-binding factor 1A
STRINGOGLUM09G17430.11e-172(Oryza glumipatula)
STRINGORUFI09G18210.11e-172(Oryza rufipogon)
STRINGOS09T0522200-011e-172(Oryza sativa)
STRINGONIVA09G17900.11e-172(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1208746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-35C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Dubouzet JG, et al.
    OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
    Plant J., 2003. 33(4): p. 751-63
    [PMID:12609047]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  4. Ito Y, et al.
    Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice.
    Plant Cell Physiol., 2006. 47(1): p. 141-53
    [PMID:16284406]
  5. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  6. Oh SJ,Kwon CW,Choi DW,Song SI,Kim JK
    Expression of barley HvCBF4 enhances tolerance to abiotic stress in transgenic rice.
    Plant Biotechnol. J., 2007. 5(5): p. 646-56
    [PMID:17614953]
  7. Xiao BZ, et al.
    Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions.
    Mol Plant, 2009. 2(1): p. 73-83
    [PMID:19529831]
  8. Mito T,Seki M,Shinozaki K,Ohme-Takagi M,Matsui K
    Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice.
    Plant Biotechnol. J., 2011. 9(7): p. 736-46
    [PMID:21114612]
  9. Sun H, et al.
    ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.).
    Mol. Biotechnol., 2012. 52(2): p. 101-10
    [PMID:22161313]
  10. Huang J, et al.
    A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(3): p. 337-50
    [PMID:22930448]
  11. Lourenço T, et al.
    Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response.
    Plant Mol. Biol., 2013. 83(4-5): p. 351-63
    [PMID:23780733]
  12. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  13. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  14. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  15. Paul S,Gayen D,Datta SK,Datta K
    Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress.
    Plant Sci., 2015. 234: p. 133-43
    [PMID:25804816]
  16. Challam C,Ghosh T,Rai M,Tyagi W
    Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.
    J. Genet., 2015. 94(2): p. 231-8
    [PMID:26174670]
  17. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]
  18. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  19. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]
  20. Huo C, et al.
    Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice.
    Mol. Cell Proteomics, 2016. 15(4): p. 1397-411
    [PMID:26747563]
  21. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  22. Kudo M, et al.
    Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.
    Plant Biotechnol. J., 2017. 15(4): p. 458-471
    [PMID:27683092]
  23. He X, et al.
    A rice jacalin-related mannose-binding lectin gene, OsJRL, enhances Escherichia coli viability under high salinity stress and improves salinity tolerance of rice.
    Plant Biol (Stuttg), 2017. 19(2): p. 257-267
    [PMID:27718311]