PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os09g34330.1 | ||||||||
Common Name | LOC4347601, Os09g0519100, OSJNOa211K08.10, P0498F03.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 29745.5 Da PI: 6.5161 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.8e-12 | 111 | 156 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N +f Lr +P+ +++Ka+ L A YI +L LOC_Os09g34330.1 111 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 156 89************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.021 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 109 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.31E-11 | 110 | 161 | No hit | No description |
Pfam | PF00010 | 1.4E-9 | 110 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 111 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MDELLSPCSS FSPPSPSSMF STGAAAAAAH AVLEFTSCEV PDEWLMGDVV MAKNEEDVGG 60 GELWPVFAGG SLSPDSELSE LPRSFEAAAA QRPAKRRGRK PGPRPDGPTV SHVEAERQRR 120 EKLNRRFCDL RAAVPTVSRM DKASLLADAA AYIAELRARV ARLESDARQA AAARFEPSSC 180 GGGGNASYHG GGGGGGAAPG LDEAVEVRKM GRDAAAVRVT TTGARHAPAR LMGALRSLEL 240 PVQHACVMRV HGATTVQEVL VDVPAALQDG DALRAALLQR LQDS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_B | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_E | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_F | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_G | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_I | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_M | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
5gnj_N | 1e-18 | 110 | 169 | 7 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 115480198 | 0.0 | ||||
Expression Atlas | Q69IU0 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os09g34330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os09g34330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 0.0 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 0.0 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876009.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A0E0IMH2 | 0.0 | A0A0E0IMH2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QTX7 | 0.0 | A0A0E0QTX7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z369 | 0.0 | A2Z369_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QQI5 | 0.0 | I1QQI5_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q69IU0 | 0.0 | Q69IU0_ORYSJ; Os09g0519100 protein | ||||
STRING | ORUFI09G17940.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA09G17720.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA09G0131400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 | Representative plant | OGRP13127 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46760.1 | 2e-10 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os09g34330.1 |
Entrez Gene | 4347601 |