PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g33580.1
Common NameLOC4347540, Os09g0510500, OsJ_29973, OSNPB_090510500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 283aa    MW: 30992.6 Da    PI: 6.7421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g33580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09117164455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  LOC_Os09g33580.1 117 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 164
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17111180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-11111168No hitNo description
Gene3DG3DSA:4.10.280.109.0E-17113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-7117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLITNNG FLFCHGSHGG AATTTAPAIP EDASMETSSV VLDTSPQDKK  60
RKPREEDTAS LNSAHSKEAK ENGRKRGGKK HSRDQMEEEA PQGFIHVRAR RGQATDSHSL  120
AERVRRERIS ERMRMLQALV PGCDKVTGKA LILDEIINYV QSLQNQVEFL SMRIASLSPV  180
LYGFGIDSDA FSDHSQKMEG MFHEAVAIPA SVLNRGSSPA QSHAIMDTSN TSPTPYTLQV  240
QGGSNNNSLS QDNGSYIMQT VGEPRQELFN QVVLNNYMCS FQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.880280.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329762060.0
Expression AtlasQ0J0G7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g33580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g33580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611378.10.0transcription factor bHLH137
RefseqXP_015611379.10.0transcription factor bHLH137
TrEMBLA0A0E0IM780.0A0A0E0IM78_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QTL20.0A0A0E0QTL2_ORYRU; Uncharacterized protein
TrEMBLI1QQB20.0I1QQB2_ORYGL; Uncharacterized protein
TrEMBLQ0J0G70.0Q0J0G7_ORYSJ; Os09g0510500 protein
STRINGORUFI09G17270.20.0(Oryza rufipogon)
STRINGOS09T0510500-010.0(Oryza sativa)
STRINGORGLA09G0124100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-40bHLH family protein