PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g33490.1 | ||||||||
Common Name | LOC4347530, Os09g0509100, OsJ_29961, OSNPB_090509100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 26168.3 Da PI: 9.8914 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.7 | 2.2e-36 | 8 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yL++++ ++l++ vi++v d + ++PwdLp a++ e yfFs r+ ++a+ g ++r + sgyWkatg +k LOC_Os09g33490.1 8 LPPGFRFHPTDEELVVQYLRRRALCRPLPA-AVIPDVhDATVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAEK 96 79****************************.8999999***********...457889*******999986324456666799********** PP NAM 91 evlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ + +++lvg+k+tL f +++ p+ +t+Wvmheyrl LOC_Os09g33490.1 97 PVFLRgfgcgggggggGQHLVGVKTTLLFLRAKPPS--RTHWVMHEYRL 143 *****999999998877778**********666666..*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-42 | 4 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.633 | 8 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-23 | 9 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LCRPLPAAVI PDVHDATVLD PWDLPGAGDG 60 EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGGG GGGQHLVGVK 120 TTLLFLRAKP PSRTHWVMHE YRLAAAGAVA VAAAGQTKRG NHSCMAQPGE WVVCRIFLKN 180 NRSSRRRAGD ADGETPVTGV HGHRRRQPSP SPSSSSCVTA EVSDGEGEEE VSSGSINGAP 240 SASQREA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-31 | 7 | 181 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.37548 | 1e-163 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116641146 | 1e-163 | ||||
Expression Atlas | Q0J0H5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g33490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g33490 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060509 | 0.0 | AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651404.1 | 1e-180 | NAC domain-containing protein 83 | ||||
TrEMBL | Q0J0H5 | 1e-179 | Q0J0H5_ORYSJ; Os09g0509100 protein | ||||
STRING | OS09T0509100-01 | 1e-180 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 | Representative plant | OGRP13125 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-32 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g33490.1 |
Entrez Gene | 4347530 |