PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g32510.5
Common NameLOC4347486, Os09g0501600, OsJ_29905, OSNPB_090501600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 263aa    MW: 28870.3 Da    PI: 5.004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g32510.5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-0980127455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LOC_Os09g32510.5  80 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 127
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.90E-1174131No hitNo description
SuperFamilySSF474592.75E-1774145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1776144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.45976126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-780127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1082132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLNMSRSISS LGLQVGEAKA PDSKKCKAEV NPKVEEAASD GSVGDRVQKQ GKGKNSSKPA  60
AEPPKDYVHV RARRGQATDS HSLAERVRRE KISQRMKVLQ DLVPGCNKVV GKALMLDEII  120
NYVQSLQQQV EFLSMKLATV NPQLDFGNLS TLLQKDMFQS CGPSVNSVFP LESAGTAFPF  180
CDQADFFQSF GLGAMENQCS LDLANTALPH TGSTQYAFQK QQRDLWEDNT FQYNDEQSQE  240
DAVSAPNFDG QLQAADHTEI EF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0J0S0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g32510.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g32510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
SwissprotQ9CAA92e-52BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0E0ILZ20.0A0A0E0ILZ2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QTC50.0A0A0E0QTC5_ORYRU; Uncharacterized protein
TrEMBLA2Z2S80.0A2Z2S8_ORYSI; Uncharacterized protein
TrEMBLQ0J0S00.0Q0J0S0_ORYSJ; Os09g0501600 protein
STRINGORUFI09G16640.10.0(Oryza rufipogon)
STRINGOS09T0501600-010.0(Oryza sativa)
STRINGONIVA09G16520.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]