PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g32510.3
Common NameLOC4347486, Os09g0501600, OsJ_29905, OSNPB_090501600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 369aa    MW: 38783.1 Da    PI: 5.1297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g32510.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09184231455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LOC_Os09g32510.3 184 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 231
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-10178235No hitNo description
SuperFamilySSF474595.1E-17178249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GAGLFGLPAV  60
GNAERGGCSR EGSSVSDPAW AHATGGGGDN ARKRKAPASA AAGKDKDAVV GGGSSPCEVG  120
EAKAPDSKKC KAEVNPKVEE AASDGSVGDR VQKQGKGKNS SKPAAEPPKD YVHVRARRGQ  180
ATDSHSLAER VRREKISQRM KVLQDLVPGC NKVVGKALML DEIINYVQSL QQQVEFLSMK  240
LATVNPQLDF GNLSTLLQKD MFQSCGPSVN SVFPLESAGT AFPFCDQADF FQSFGLGAME  300
NQCSLDLANT ALPHTGSTQY AFQKQQRDLW EDNTFQYNDE QSQEDAVSAP NFDVASSRSH  360
RDRVLDDQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0J0S0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g32510.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g32510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
SwissprotQ9SRT23e-58BH062_ARATH; Transcription factor bHLH62
TrEMBLQ0J0S00.0Q0J0S0_ORYSJ; Os09g0501600 protein
STRINGOS09T0501600-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]