PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g31454.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 648aa    MW: 66938.4 Da    PI: 10.375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g31454.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88.1e-112777446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                      W t E++ll++av ++G+g+W+++a +++         g+t+ +c++r++ 
  LOC_Os09g31454.1 27 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRH 77
                      9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-62381IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-62582IPR009057Homeodomain-like
CDDcd001678.55E-52759No hitNo description
PfamPF002497.2E-102776IPR001005SANT/Myb domain
PROSITE profilePS500906.4462779IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-52779IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MADGSDGPDV SPAAAAAAGG GGGGEIWGTL EELLLACAVS RHGTGSWDSV AMEVQTRSPL  60
AARPGLTPTS CRLRFRHLHR RFSVGGAAEE DDDDEEAEEG GPDASAADGW MDELRRLRVA  120
ELRREVERCD LSIGTLQTKV KRLREEREQS IHGGGGGEGK PETANGDERL SSEEPGRSCR  180
ESNSTDLKPA ARAGDHSVKA EEEDEDAAAA KQQASGESVA ASKESSDLRS SASLRRRRRY  240
KPGADEDADG EEASALRPPS QSPSSSSSSQ PLAALLDTFA ARFGPLLERL HESQESDAYR  300
GAIRRHVDIE MVRRRLDASP AGGGGGGAAA AEFYRDLLLL CANALVFFPR AGPERGAAAE  360
ARALVSASLR LREPKQEPGT AAAAAVAAAA GSPPAEDTRR AEGVVSVGGG GGGAGIVGSL  420
IEKGGKPLIV CRKRSSIAKA AAAAKKEESA EKGEAAEEGE GSDDGEKKVS VSASASKDKA  480
WGLRTKKGRG PGKNSASVGG RKMAKLSEAT EAATDGSKKP DKKIAADAAT PAKKRNAVDF  540
LKRLNQGSSP SKKKKKGSPM GTRKRAAAAT SPEQPQKTRK GPGRKDAGRG GSKKGGKSAT  600
PKRSVGRPPS KRGAAAATTP PPSKRAKVNR SEKTAATATA AKRGGRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1532554KKRNAVDFLKRLNQGSSPSKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1001370.0panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329749750.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g31454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g31454
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087620.0AC108762.2 Oryza sativa Japonica Group chromosome 9 clone OSJNBb0052C07, complete sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612366.10.0uncharacterized protein LOC9269664
TrEMBLA0A0E0ILL10.0A0A0E0ILL1_ORYNI; Uncharacterized protein
STRINGONIVA09G15440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-13DNA-binding bromodomain-containing protein