PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g31438.1 | ||||||||
Common Name | LOC9266075, Os09g0491532, OsJ_028679, SPL17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | SBP | ||||||||
Protein Properties | Length: 401aa MW: 41650.1 Da PI: 8.5722 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 119.2 | 2e-37 | 73 | 156 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCs rfh+l efD+ek+sCrrrLa+hnerrrk++ LOC_Os09g31438.1 73 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSrcsvhmvRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 156 6*********************************************955555555***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 28.667 | 71 | 155 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-29 | 71 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-36 | 72 | 158 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-27 | 74 | 154 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV 60 AAAAAPPPPL PPRCQVEGCG VDLSGVKPYY CRHKVCYMHA KEPIVVVAGL EQRFCQQCSR 120 CSVHMVRFHQ LPEFDQEKKS CRRRLAGHNE RRRKPTPGPL SSRYGRLAAS FHEEPGRSRS 180 FVVDFSYPRV PSSVRDAWPA IQPSDRMSGS IQWQGGHELH PHRSAVAGYS DHHAFSSHGG 240 SAAGAPMLHH PAFELTSGGC LAGVATDSSC ALSLLSTQPW DTTQSTSSHN RSPPMSSTAS 300 AFGGGNNPVS PSVMASNYMA ASPGWNSSSR GHDGARNVHL PPPHGVVLNE VPPGSVHHGH 360 FSGELELALQ GGAPSNRPEA EHGSGSGAFS HSTNAMNWSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 74 | 154 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.93287 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973579 | 0.0 | ||||
Expression Atlas | A3C057 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g31438.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g31438 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063561 | 0.0 | AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610961.1 | 0.0 | squamosa promoter-binding-like protein 17 isoform X1 | ||||
Swissprot | A3C057 | 0.0 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | A0A0E0ILK7 | 0.0 | A0A0E0ILK7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G15400.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-42 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g31438.1 |
Entrez Gene | 9266075 |
Publications ? help Back to Top | |||
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