PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g31390.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 428aa    MW: 47059.2 Da    PI: 7.328
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g31390.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-11104147141
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                       e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  LOC_Os09g31390.3 104 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 147
                       6778999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-9102152No hitNo description
SMARTSM003385.8E-7104203IPR004827Basic-leucine zipper domain
PfamPF001702.1E-8105147IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082106148IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-7108149No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
PfamPF141446.2E-28212286IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDDAETLNIF PSQPMHVEPS PKGEISLVLS PAAVGTKMAR SPDHHHHHQQ QAAAAMEELA  60
TGSRRQDHHH LQHQPFAAEP AGINRDVKPV TAKKDHRRGV STGERDPKTL RRLAQNREAA  120
RKSRLRKKAY IQQLESSRIR LAQLEQELHT ARAQGVFFPG SGGLIGEGGS GKGVLLGGID  180
GVGGGGGGGL SSEAAMFDVE YGRWQEEHHR LMYELRAALQ QQLPEGELQV YVESCLAHHD  240
EVAAIKDGAI RGDVFHLISG VWMSPAERCF LWLGGFRPSE VIKMLVAHVE PLTEQQIVGV  300
YGLQQSALET EEALTQGLDA LYQSLSDTVV SDALSCPSNV ANYMGQMAVA INKLSTLEGF  360
VRQAENLRQQ TLHRLQQVLT TRQMARSLLA VSDYFHRLRT LSSLWVTRPR HPPHDHQPPP  420
HSAAPHT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538100.0callus| flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329854190.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g31390.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g31390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031740.0AK103174.1 Oryza sativa Japonica Group cDNA clone:J033121H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612565.10.0transcription factor TGA2 isoform X1
SwissprotQ52MZ21e-155TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0D3H8C10.0A0A0D3H8C1_9ORYZ; Uncharacterized protein
STRINGOS09T0489500-020.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-128bZIP family protein