PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g31390.2 | ||||||||
Common Name | LOC4347436, Os09g0489500, OSNPB_090489500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 522aa MW: 57661.7 Da PI: 7.238 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.8e-11 | 198 | 241 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e LOC_Os09g31390.2 198 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 241 6777999************************9633355555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-9 | 196 | 246 | No hit | No description |
SMART | SM00338 | 5.8E-7 | 198 | 297 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-8 | 199 | 241 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.082 | 200 | 242 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.0E-7 | 202 | 243 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 205 | 220 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.4E-28 | 306 | 380 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MMSGSESQQE REHRQQQEMN ISFGMMMNHG HHHYGQHQQQ HHHHPPPSSS SSSSMHAAAA 60 SFIKEASAGA YDHLGELDQA LFMYLDHGSH AASHQEQRQT LNIFPSQPMH VEPSPKGEIS 120 LVLSPAAVGT KMARSPDHHH HHQQQAAAAM EELATGSRRQ DHHHLQHQPF AAEPAGINRD 180 VKPVTAKKDH RRGVSTGERD PKTLRRLAQN REAARKSRLR KKAYIQQLES SRIRLAQLEQ 240 ELHTARAQGV FFPGSGGLIG EGGSGKGVLL GGIDGVGGGG GGGLSSEAAM FDVEYGRWQE 300 EHHRLMYELR AALQQQLPEG ELQVYVESCL AHHDEVAAIK DGAIRGDVFH LISGVWMSPA 360 ERCFLWLGGF RPSEVIKMLV AHVEPLTEQQ IVGVYGLQQS ALETEEALTQ GLDALYQSLS 420 DTVVSDALSC PSNVANYMGQ MAVAINKLST LEGFVRQAEN LRQQTLHRLQ QVLTTRQMAR 480 SLLAVSDYFH RLRTLSSLWV TRPRHPPHDH QPPPHSAAPH T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53810 | 0.0 | callus| flower| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985419 | 0.0 | ||||
Expression Atlas | Q0J0P4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g31390.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g31390 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100210 | 0.0 | AK100210.1 Oryza sativa Japonica Group cDNA clone:J023043A12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612566.1 | 0.0 | transcription factor TGA2 isoform X2 | ||||
Swissprot | Q52MZ2 | 1e-168 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | Q0J0P4 | 0.0 | Q0J0P4_ORYSJ; Os09g0489500 protein | ||||
STRING | OBART09G14730.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-130 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g31390.2 |
Entrez Gene | 4347436 |
Publications ? help Back to Top | |||
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