PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g31390.1
Common NameLOC4347436, Os09g0489500, OsJ_29832, OSNPB_090489500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 524aa    MW: 57853.9 Da    PI: 7.238
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g31390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-11200243141
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                       e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  LOC_Os09g31390.1 200 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 243
                       6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.6E-9198248No hitNo description
SMARTSM003385.8E-7200299IPR004827Basic-leucine zipper domain
PfamPF001702.7E-8201243IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082202244IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-7204245No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
PfamPF141448.5E-28308382IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MMSGSESQQE REHRQQQEMN ISFGMMMNHG HHHYGQHQQQ HHHHPPPSSS SSSSMHAAAA  60
SFMSSKEASA GAYDHLGELD QALFMYLDHG SHAASHQEQR QTLNIFPSQP MHVEPSPKGE  120
ISLVLSPAAV GTKMARSPDH HHHHQQQAAA AMEELATGSR RQDHHHLQHQ PFAAEPAGIN  180
RDVKPVTAKK DHRRGVSTGE RDPKTLRRLA QNREAARKSR LRKKAYIQQL ESSRIRLAQL  240
EQELHTARAQ GVFFPGSGGL IGEGGSGKGV LLGGIDGVGG GGGGGLSSEA AMFDVEYGRW  300
QEEHHRLMYE LRAALQQQLP EGELQVYVES CLAHHDEVAA IKDGAIRGDV FHLISGVWMS  360
PAERCFLWLG GFRPSEVIKM LVAHVEPLTE QQIVGVYGLQ QSALETEEAL TQGLDALYQS  420
LSDTVVSDAL SCPSNVANYM GQMAVAINKL STLEGFVRQA ENLRQQTLHR LQQVLTTRQM  480
ARSLLAVSDY FHRLRTLSSL WVTRPRHPPH DHQPPPHSAA PHT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538100.0callus| flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329854190.0
Expression AtlasB7EU89-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Function -- GeneRIF ? help Back to Top
  1. Study showed that OsTGA2 could confer pathogen defense response via interacting with OsNH1 and regulating the expression of biotic stress mediators. It could serve as a good target for pathogen resistance in crop.
    [PMID: 30444888]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g31390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g31390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031740.0AK103174.1 Oryza sativa Japonica Group cDNA clone:J033121H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612565.10.0transcription factor TGA2 isoform X1
SwissprotQ52MZ21e-167TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLB7EU890.0B7EU89_ORYSJ; Os09g0489500 protein
STRINGOS09T0489500-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-131bZIP family protein
Publications ? help Back to Top
  1. Moon SJ, et al.
    OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.
    PLoS ONE, 2018. 13(11): p. e0206910
    [PMID:30444888]