PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g31300.2 | ||||||||
Common Name | LOC4347431, Os09g0487900, OSNPB_090487900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 41741.6 Da PI: 8.9285 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 331 | 376 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ k + a++L +Av+YIk+Lq LOC_Os09g31300.2 331 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 376 689*********************7....467*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.243 | 325 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-15 | 328 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-12 | 329 | 379 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-14 | 330 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-12 | 331 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-10 | 331 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGGQLQL 60 QLQQQRPGSP DHAADTVLAR FLAGHGGHDN KPPRPAAHFA PPEDSMASHQ QQLMYQSHQQ 120 QQQMASAMEG LYRTVSSGGT ESTAAAAGNS LLRQSSSPAG FLNHLTMDNG YGNMLRAGMG 180 GGGGGGDPRL KGQLSFSSRQ GSVMSQISEM GSEDEELAGG GGSPEAGSNG GGAARGGYGG 240 GYAMGSSAWE EPSPPATSLL PDSSLPSKRP RDDLPRQLSL PAASKNSSKP PSSASAAASP 300 EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE LVPNMEKQTN 360 TADMLDLAVD YIKELQKQVL NDSRSSCTCS ASKQKHFAG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5311 | 2e-79 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985315 | 2e-79 | ||||
Expression Atlas | Q0J0Q4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g31300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g31300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120902 | 0.0 | AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612612.1 | 0.0 | transcription factor bHLH130 | ||||
TrEMBL | Q0J0Q4 | 0.0 | Q0J0Q4_ORYSJ; Os09g0487900 protein | ||||
STRING | OS09T0487900-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 6e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g31300.2 |
Entrez Gene | 4347431 |