PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g29830.3 | ||||||||
Common Name | OsJ_29731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 429aa MW: 45288.4 Da PI: 6.1931 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 257 | 305 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq LOC_Os09g29830.3 257 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 305 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-17 | 252 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.92E-11 | 252 | 309 | No hit | No description |
PROSITE profile | PS50888 | 15.65 | 254 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 255 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-7 | 257 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-11 | 260 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MDMSESSEKG MESNASSGPG NGIPVEWQSQ FSSAFACQPS VAAQHQQHAM MDSFAAASAG 60 LWASSDVVSA MSSAAPPRGA GFLAPVPGFL QQGLGHFPVD SGFIERAARS TCFGGGMMAG 120 GPYGAADQAM GDAFGGTAEG LMDHHRNVGN DKAEEFAGNG HDEVPSSEVA GGDCSSKGSD 180 SKKRRRPNEV MGTDQVHSSN LPSDSANESV HSKDKGEESS PATTNGGKSK GKGAKETSES 240 QKEEYIHVRA RRGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY 300 VQSLQRQVEF LSMKLATVNP RLDLNIEGLL SKDLLRFPGV PSSSIGFSPE MMHPQLQLSQ 360 PGLIHGGTAG MANPDVFRRI IQAQLGAKDG SQMPHSLNGS FSDVSQMAYP SLGSQDLSIR 420 PSQDGFQM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38400 | 0.0 | callus| flower| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991041 | 0.0 | ||||
Expression Atlas | B9G448 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g29830.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g29830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121418 | 0.0 | AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612420.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | B9G448 | 0.0 | B9G448_ORYSJ; Uncharacterized protein | ||||
STRING | OS09T0474100-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g29830.3 |