PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29830.1
Common NameOsJ_29731
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 452aa    MW: 47806.3 Da    PI: 6.1942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09280328355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LOC_Os09g29830.1 280 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 328
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.27E-11275332No hitNo description
SuperFamilySSF474596.8E-17275345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16278344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-7280328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MLCSAGYYYA LGIRSLEPRL GDSMDMSESS EKGMESNASS GPGNGIPVEW QSQFSSAFAC  60
QPSVAAQHQQ HAMMDSFAAA SAGLWASSDV VSAMSSAAPP RGAGFLAPVP GFLQQGLGHF  120
PVDSGFIERA ARSTCFGGGM MAGGPYGAAD QAMGDAFGGT AEGLMDHHRN VGNDKAEEFA  180
GNGHDEVPSS EVAGGDCSSK GSDSKKRRRP NEVMGTDQVH SSNLPSDSAN ESVHSKDKGE  240
ESSPATTNGG KSKGKGAKET SESQKEEYIH VRARRGQATN SHSLAERLRR EKISERMKLL  300
QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDLNIE GLLSKDLLRF  360
PGVPSSSIGF SPEMMHPQLQ LSQPGLIHGG TAGMANPDVF RRIIQAQLGA KDGSQMPHSL  420
NGSFSDVSQM AYPSLGSQDL SIRPSQDGFQ M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.384000.0callus| flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379910410.0
Expression AtlasB9G448-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612420.10.0transcription factor bHLH49 isoform X2
TrEMBLB9G4480.0B9G448_ORYSJ; Uncharacterized protein
STRINGOGLUM09G14350.40.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.36e-64bHLH family protein