PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29360.1
Common NameLOC9267272, OJ1595_D08.4, Os09g0468700, OsJ_29696, OSNPB_090468700, P0676H02.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 352aa    MW: 37194 Da    PI: 6.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-14132183155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  LOC_Os09g29360.1 132 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 183
                       79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.18E-14130187No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13130187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17131200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-11132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALEAVLLSR GDLFGRRRCA MEGGGGGWSS PFSGFEGVMD LDGGNWDAAA CSSMLLHGFQ  60
ELEIPAAAAA AAAMAPPPPP VEPANCAENA GGVGGHQEDQ AAVAAAATAV QSGRRKRRRA  120
RAAKNKEEVE SQRMTHIAVE RNRRKQMNEY LAVLRSLMPP SYAQRGDQAS IVGGAINFVK  180
ELEQLLQSLE ARKSSRQCAA HDAAAAAAPF ASFFTFPQYS MSAAAAAAPV APVVNELHGR  240
DDGGAGTAEA EASGSKPSAV ADVEVTMVES HANLRVLSRR RPRQLLRLVV ALQGHRLTVL  300
HLNMTSAGHM VLYSFSLKVE DDCQLTSVDE IATAAHQIIE KIQEEQGCSL D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114118RKRRR
2132143RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.986680.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K4B1
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053990.0AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055740.0AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.10.0transcription factor bHLH94
RefseqXP_015612233.10.0transcription factor bHLH94
SwissprotQ9C7T48e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLQ6K4B10.0Q6K4B1_ORYSJ; Helix-loop-helix DNA-binding protein-like
STRINGOS09T0468700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]