PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g28354.1 | ||||||||
Common Name | B1342C04.35, HSF23, HSFB1, LOC4347259, Os09g0456800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 303aa MW: 32799 Da PI: 9.7192 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.2 | 4.8e-32 | 31 | 123 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ +++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ weF++ +F++g++ ll LOC_Os09g28354.1 31 FLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLL 114 9*****************************************************************99.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 + i+r+k + LOC_Os09g28354.1 115 SGIRRRKAT 123 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-34 | 27 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.07E-32 | 27 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.3E-53 | 27 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.3E-28 | 31 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-17 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-17 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 70 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-17 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAAAEAAAAV GKQQQKGGGG RGGGGGGPAP FLTKTNQMVE ESATDEVISW GKEGRSFVVW 60 KPVEFARDLL PLHFKHCNFS SFVRQLNTYG FRKVVPDRWE FANGNFRRGE QGLLSGIRRR 120 KATTPQSSKS CGSGVNVAFP PPLPPLPPEP SATTSSGNDR SSSSASSPPR ADITSENEQL 180 RKDNQTLTME LARARRHCEE LLGFLSRFLD VRQLDLRLLM QEDMRAAAGG VGGEQRVQEH 240 AREEKCVKLF GVLLDDTHGA ATRKRARCEE AAASERPIKM IRIGEPWVSV PSSGPARCGG 300 DN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 1e-20 | 31 | 124 | 5 | 109 | Heat shock factor protein 2 |
5d8l_B | 1e-20 | 31 | 124 | 5 | 109 | Heat shock factor protein 2 |
5d8l_D | 1e-20 | 31 | 124 | 5 | 109 | Heat shock factor protein 2 |
5d8l_F | 1e-20 | 31 | 124 | 5 | 109 | Heat shock factor protein 2 |
5d8l_H | 1e-20 | 31 | 124 | 5 | 109 | Heat shock factor protein 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 26 | GGRGGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27176 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986391 | 0.0 | ||||
Expression Atlas | Q67TP9 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g28354.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g28354 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061433 | 0.0 | AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611859.1 | 0.0 | heat stress transcription factor B-1 | ||||
Swissprot | Q67TP9 | 0.0 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | F1DK71 | 0.0 | F1DK71_ORYSJ; HSF-BDB transcription factor (Fragment) | ||||
STRING | OS09T0456800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 8e-50 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g28354.1 |
Entrez Gene | 4347259 |