PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g28200.1
Common NameHSF22, HSFB4C, LOC4347251, Os09g0455200, P0025H07.19
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 395aa    MW: 42036.1 Da    PI: 8.6417
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g28200.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35251182103
                       HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+l
  LOC_Os09g28200.1  25 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQL 108
                       9********************6667*****************************************999.........*************** PP

                       XXXXXXXXXX CS
      HSF_DNA-bind  94 lekikrkkse 103
                       l++i+r+k++
  LOC_Os09g28200.1 109 LTEIHRRKTS 118
                       *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3614109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5721115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.72E-3122115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-3025115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MERCGSWSDC EAAAAAAQKA VPAPFLTKTY QLVDDPATDH IVSWGDDRVS TFVVWRPPEF  60
ARDILPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANEF FRKGEKQLLT EIHRRKTSSA  120
STASPSPPPF FAPPHFPLFH HPGVAAAQHH HAFVGDDGVV AAHGIGMPFP QPHWREPNLP  180
VATRLLALGG PAPSPSSAEA GGAGRAATAA VLMEENERLR RSNTALLQEL AHMRKLYNDI  240
IYFVQNHVRP VAPSPAAAAF LQGLGMQARK KPAAANVLNN SGGSTTSSSS LTIAEEPSPP  300
PQQQHLAGEK SGGEAGNSSA ARSSAPTKLF GVHLSAAPCG AGSKRASSPE EHPPTSPATK  360
PRLVLECDDL SLTVAPSSSS QQQLSAASSP TSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221411719131Heat shock factor protein 1
5d5v_B2e-221411719131Heat shock factor protein 1
5d5v_D2e-221411719131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.613080.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160141410.0
Expression AtlasQ67U94-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g28200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q67U94
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g28200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411900.0AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.10.0heat stress transcription factor B-4c
SwissprotQ67U940.0HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0QSB20.0A0A0E0QSB2_ORYRU; Uncharacterized protein
STRINGORUFI09G13600.10.0(Oryza rufipogon)
STRINGOS09T0455200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-76heat shock transcription factor B4
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  3. Mittal D, et al.
    Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).
    FEBS J., 2011. 278(17): p. 3076-85
    [PMID:21729241]