PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g27850.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 441aa    MW: 46194.1 Da    PI: 8.6682
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g27850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.58.2e-33191288298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                       +++r+ws+ De+v+L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l+
  LOC_Os09g27850.1 191 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQLA 282
                       678************************888899***************************************999999.9************* PP

            DUF573  93 kkiWgs 98 
                       kk+Wg+
  LOC_Os09g27850.1 283 KKVWGT 288
                       ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-27193287IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAPKRPAEEA DAAAAAAAAA GGSASEGSDA EASAEAARGH GSSPSPSKTP PPANPNPKSA  60
AAPPSAVAAP ASAAGSDSGA ASDSPRAAGN PSGPRSIEVN SDSEDSALPL ASDAYADQAA  120
AAGAGAGADS DDGNTSPLPP PRPSRAEAAA IKPISSRPMD PPPRRSAGGS EPRAKRPRSA  180
AVASSAEHSK RPSRVWSQAD ELVILRGLIT YRTKRGVLPG STQDIGKLHS YIRGQLSAKV  240
STTQLSDKVR RLKQKYQMLA TRAKTGKEVF PTPHDHNIYQ LAKKVWGTMS TAGEGGGSGY  300
DNADAGESEE EQYGRESDDD MESGRDNRHR KNQRSVPVTM ANGNGTGIGA VNAIVRGRSE  360
FEKGKDVYPY LWETVEELSS QHPTGAVFKK AFELLEGSKA QVMEEKLRKF RLTEMRQQLR  420
RMDLMKDTLS MVLDALEMAD *
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO89267540.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g27850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g27850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0E0QS760.0A0A0E0QS76_ORYRU; Uncharacterized protein
STRINGORUFI09G13330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Representative plantOGRP1071349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-15DNA-binding storekeeper protein-related transcriptional regulator