PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g27650.2
Common NameLOC4347215, OsJ_29579
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 505aa    MW: 53574.2 Da    PI: 8.5009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g27650.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-066688123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F r  nL+ H r+H
  LOC_Os09g27650.2 66 YVCEICNQGFQRDQNLQMHRRRH 88
                      9*********************9 PP
2zf-C2H211.60.00086145166223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C  C+k +  +s++k H++t+
  LOC_Os09g27650.2 145 ACARCSKAYAVHSDYKAHLKTC 166
                       6*******************98 PP
3zf-C2H210.70.0016174192523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr +++  H+ t+
  LOC_Os09g27650.2 174 DCGRVFSRVESFIEHQDTC 192
                       9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-56389No hitNo description
Gene3DG3DSA:3.30.160.602.1E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976688IPR007087Zinc finger, C2H2
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355100108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001135165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230144171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MLGSCAPTTA GPPPDEATTP EPFRSLQIAT ASAGSAKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPTCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCNASRGQAA AVAEGGNVST AACGGVAVLE QEKQLDLQAP AAASLSRTAS  240
STSPSSDVVA SPVAWPGAGA PSMPSPKAAA FRGRFDMAPS PPPPSYDHYR GGAGAHNLEL  300
QLMPPFNAGG AAAAPGGMGA CFYAAAHQHH PTGVSQCNDA STQLQLSIGR DEVMGAAGTS  360
DEASAAATAK EQAREQLRQA MAEKEAAGEA RAQARRQVEL AEQELATARR MRHQAQVELS  420
RAHALRDHAV RQVNATLLQI TCFSCRHKFR AAAAGAPLPA AMSSDVACSY VSSVVTEGGD  480
ADDPLDVVDA TRRRLQHANS MGIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-17140207370Zinc finger protein JACKDAW
5b3h_F4e-17140207370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKKRR
23641KKKRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.57330.0flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976095620.0
Expression AtlasA3BZE8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g27650.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g27650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889640.0AK288964.1 Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610838.10.0protein indeterminate-domain 16
SwissprotQ9C9X71e-130IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA3BZE80.0A3BZE8_ORYSJ; Uncharacterized protein
STRINGORUFI09G13180.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-107indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]