PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g27190.1
Common NameLOC107276552, OsJ_29545
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Nin-like
Protein Properties Length: 340aa    MW: 37221.6 Da    PI: 5.4593
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g27190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.73.6e-16200250352
            RWP-RK   3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       k+++ +dl++yF+ + k+AA   L +++T+LK  CR + ++RWP+R+i+sl
  LOC_Os09g27190.1 200 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 250
                       899*****************84499***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.356180270IPR003035RWP-RK domain
PfamPF020428.2E-17201250IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATGGSSSSS NVPSGGAAGG GAGSGKLPMV PVGSIECLRK RCRQLRVLIH VNDHRKAVVV  60
LHAGEDGKPD HVLVQNVSPE GEASVQSTYR IDVSGETPES QAEMLNDWYT SFRMDTTGVL  120
YDSDQNVIYG VPRGHPGGDV PRSLAILPPA PKKNQHGKAP ATESNSSLVE EPLLLVQTDQ  180
PAAIGKRKKF TFPDQRKRVK TMTKKDLESY FHITQKSAAH IGLSIGTTAL KNLCRANDLP  240
RWPYRQIASL DNKFNNNLKK QITGWNLGKA VQGVTKAFKL RKEKEEFYQK IMSSMPEQLQ  300
SIDEIVNSLP EADDDIDIED DEDNDDVIED NDDDNSDEN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9G3W3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g27190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g27190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054191e-158AP005419.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0046G12.
GenBankAP0057201e-158AP005720.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1123_B08.
GenBankAP0149651e-158AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.11e-165PREDICTED: uncharacterized protein LOC107304984
TrEMBLB9G3W30.0B9G3W3_ORYSJ; Uncharacterized protein
STRINGOGLUM09G12360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-08RWP-RK domain-containing protein