PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g26420.4
Common NameEREBP
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 286aa    MW: 31315.2 Da    PI: 5.2124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g26420.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-192473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  LOC_Os09g26420.4 24 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 73
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-332482No hitNo description
PROSITE profilePS5103223.9332481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-332482IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-222482IPR016177DNA-binding domain
SMARTSM003801.2E-362487IPR001471AP2/ERF domain
PfamPF008474.1E-122573IPR001471AP2/ERF domain
PRINTSPR003671.5E-112536IPR001471AP2/ERF domain
PRINTSPR003671.5E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLTTKLVQHD GPTARSAKHK RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA  60
ARAYDAEARK IRGKKAKVNF PDEPAVAQKL SLKQNAAKQE KLAPPLKTCG DDAFFQLNSS  120
DNDLFAMLAK VPAKPAEPVD LMPPVKPLAS TETFEMNMLS DTSSNSFGSS DFGWEDDTLT  180
PDYTSVFVPN AAMPAYGEPA YLTGGAPKRM RNNYGIAVPQ GNGMPNLAQN MPTFDPEMKY  240
LPLPYVESSS DESMDNLLQN DATQDGASNE GIWSLDELLM AAGAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-202381160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-202481563ATERF1
3gcc_A2e-202481563ATERF1
5wx9_A5e-2023831374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.261780.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172260850.0
Expression AtlasQ1ZZM5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g26420.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g26420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1045760.0AK104576.1 Oryza sativa Japonica Group cDNA clone:006-307-A07, full insert sequence.
GenBankAK1047230.0AK104723.1 Oryza sativa Japonica Group cDNA clone:001-038-B05, full insert sequence.
GenBankAK1116900.0AK111690.1 Oryza sativa Japonica Group cDNA clone:J023008G03, full insert sequence.
GenBankAP0055510.0AP005551.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1081_G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankDQ4171990.0DQ417199.1 Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds.
GenBankEU8372560.0EU837256.1 Oryza sativa Japonica Group clone KCS059H07 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLQ1ZZM50.0Q1ZZM5_ORYSJ; EREBP-type transcription factor
TrEMBLQ69PH30.0Q69PH3_ORYSJ; Os09g0434500 protein
TrEMBLQ8S4Y00.0Q8S4Y0_ORYSA; Putative EREBP-type transcription factor
STRINGOS09T0434500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-27related to AP2 12