PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g26420.2 | ||||||||
Common Name | LOC4347142, OJ1081_G10.25, Os09g0434500, OsJ_29481, OSNPB_090434500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 397aa MW: 42625.8 Da PI: 4.626 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 135 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g LOC_Os09g26420.2 135 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 184 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.52E-32 | 135 | 193 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 135 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 135 | 193 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.933 | 135 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 135 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-12 | 136 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 136 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MCGGAIISGF IPPSAAAAAA AAVAKKQQGR RVTADVLWPG MLRKGKAAAA EEDFEADFRE 60 FERGMSDDEA EGGGGEEEED DDDVVVVVPP PAAARFVVRA AAKAAPPTAD GMLTTKLVQH 120 DGPTARSAKH KRKNQYRGIR QRPWGKWAAE IRDPSKGVRV WLGTYNTAEE AARAYDAEAR 180 KIRGKKAKVN FPDEPAVAQK LSLKQNAAKQ EKLAPPLKTC GDDAFFQLNS SDNDLFAMLA 240 KVPAKPAEPV DLMPPVKPLA STETFEMNML SDTSSNSFGS SDFGWEDDTL TPDYTSVFVP 300 NAAMPAYGEP AYLTGGAPKR MRNNYGIAVP QGNGMPNLAQ NMPTFDPEMK YLPLPYVESS 360 SDESMDNLLQ NDATQDGASN EGIWSLDELL MAAGAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-20 | 134 | 192 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 135 | 192 | 5 | 63 | ATERF1 |
3gcc_A | 1e-19 | 135 | 192 | 5 | 63 | ATERF1 |
5wx9_A | 3e-19 | 135 | 194 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26178 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117226085 | 0.0 | ||||
Expression Atlas | Q69PH3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g26420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g26420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104576 | 0.0 | AK104576.1 Oryza sativa Japonica Group cDNA clone:006-307-A07, full insert sequence. | |||
GenBank | AK104723 | 0.0 | AK104723.1 Oryza sativa Japonica Group cDNA clone:001-038-B05, full insert sequence. | |||
GenBank | AK111690 | 0.0 | AK111690.1 Oryza sativa Japonica Group cDNA clone:J023008G03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611873.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | Q69PH3 | 0.0 | Q69PH3_ORYSJ; Os09g0434500 protein | ||||
STRING | OS09T0434500-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-30 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g26420.2 |
Entrez Gene | 4347142 |
Publications ? help Back to Top | |||
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