PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g25510.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 912aa    MW: 104490 Da    PI: 6.1727
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g25510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1911.6e-28250358191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdg 74 
                       +fYn YA++vGFs++k+++++s++++ +t++tf+C+++ k+++ k+k                    +k+r+++++  t+Cka+++++++ +g
  LOC_Os09g25510.1 250 DFYNGYAYMVGFSTCKASNYHSRKTDIVTRHTFKCNRWRKPSDPKEKdlpevdevenclqtnttnpLVKNRKQNKVVYTNCKAEMVITLK-RG 341
                       6*****************************************999999***************999999*********************.** PP

              FAR1  75 kwevtkleleHnHelap 91 
                        w++t+l+leHnH+l+p
  LOC_Os09g25510.1 342 FWYITRLNLEHNHPLSP 358
                       **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-27250358IPR004330FAR1 DNA binding domain
PfamPF105515.6E-23487561IPR018289MULE transposase domain
PROSITE profilePS509669.841715751IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-5717751IPR007527Zinc finger, SWIM-type
SMARTSM005759.1E-6726753IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MGCYRLSQEG GITYTNLIQQ VSVLPNAIFP GAQVAGGLPL LQNTCGNFMQ LLQAPIESET  60
ALYLTSNRFE YDNIFWGFDP HNGYQQNDLQ NAQTDTSQMC NSLPQSVAVH PLVASLDMLY  120
DEMQKSSADV DNQAEMCRST VQLKASSVEV IYNEMQTQTI EADACFDQHF EQATKEDLLS  180
DHAIVTFQQV EEIEQDKSAE NPDQNFSEED INIFLENESV TAVQRGGQEA NSAHVPSINK  240
VFADENEAFD FYNGYAYMVG FSTCKASNYH SRKTDIVTRH TFKCNRWRKP SDPKEKDLPE  300
VDEVENCLQT NTTNPLVKNR KQNKVVYTNC KAEMVITLKR GFWYITRLNL EHNHPLSPPE  360
ERKFLRSHKH MTDQEKLLIR TLNKINVPTR TIMSVLSYVR GGLSTVPYTK KAMSNYRDCV  420
RRESGKNDMM QCLDFFEKKR SEDPLFYFRF RTDENNVVKS LFWSDGNNRK FYEMFGDIVL  480
TRRTRPIGIT SHGDNCLFGY AFLQDETSET FQWLFNTFLD CMGGKAPATI ITDQDLAMKA  540
AIAIVFPDTV HRNCLFHMLS NARDKTGRTF NSEDEEVYKD FHDIVTKSQT EAEFEYLWKD  600
FIRRKNLYNV RYFQLMWVTR KRWAPVYFKS NWCPLIQTTA RSEGTNSRNI VPDTWSEYQF  660
EKQAAKLYTR KIFWAFQRIL QSYTKYDVTV KVHDSIFEVY KSEIHALQDF RKRKYIVVVD  720
AIAEEYECIC SRFKKDGILC VHVLKVLIHL NITKLPEKYF IERWRLKDKN HELFVPNTLM  780
PAAVLESNPL LRFNILSQKM IKLALDASKT KENFVYVMNE SDKIEDGLKA MSDTAPNDAT  840
VHVQDAAATT YGVASVGAQT GIPMGPSGVG IDAEITKGAV AETETTDMVG IASTSVLLDP  900
KCSNSKGITD C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g25510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g25510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054200.0AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08.
GenBankAP0055790.0AP005579.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1740_D06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642362.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLQ60DS90.0Q60DS9_ORYSJ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-66FAR1-related sequence 5