PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g25070.1 | ||||||||
Common Name | LOC4347070, Os09g0417800, OsJ_29379, OSNPB_090417800, P0014G10.42, P0701F11.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 33515.4 Da PI: 6.4174 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.3 | 7.6e-29 | 143 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkk++r+aed ++++ tYegeHnh LOC_Os09g25070.1 143 VKDGYQWRKYGQKVTRDNPYPRAYFRCAFApSCPVKKKLQRCAEDRSMLVATYEGEHNHA 202 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-29 | 135 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.304 | 138 | 204 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-24 | 141 | 203 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-33 | 143 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-23 | 144 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MDDDGDGSSS PTDDSAAAGL LPLFSRSPAE DLEEKLRRAM EENARLTRAL DAILAGHHAH 60 QRALLAPSLS PPPPSATARA PSVSTSCAAR EDAAPAVAAA AASTACPSRQ QPPTAEPRPK 120 VRTVRVRADA ADATDANSMA ETVKDGYQWR KYGQKVTRDN PYPRAYFRCA FAPSCPVKKK 180 LQRCAEDRSM LVATYEGEHN HALSTQTTEF VASGCTTSQH AGGSSSSPLP CSISINSSGR 240 TITLDLTNQA GSGSIASCGV EAAAVSGELV TVLSPELRRH LVEEVVQVLK NDAEFVEAVT 300 NAVAARVVDQ IPHIPVHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 138 | 203 | 9 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.48082 | 0.0 | leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 83320248 | 0.0 | ||||
Expression Atlas | Q6EPZ0 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g25070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}. | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g25070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067834 | 0.0 | AK067834.1 Oryza sativa Japonica Group cDNA clone:J013121C08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610755.1 | 0.0 | WRKY transcription factor WRKY62 | ||||
Swissprot | B8BF91 | 0.0 | WRK62_ORYSI; WRKY transcription factor WRKY62 | ||||
Swissprot | Q6EPZ0 | 0.0 | WRK62_ORYSJ; WRKY transcription factor WRKY62 | ||||
TrEMBL | A0A0E0IJL5 | 0.0 | A0A0E0IJL5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QRG6 | 0.0 | A0A0E0QRG6_ORYRU; Uncharacterized protein | ||||
STRING | OS09T0417800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12921 | 28 | 34 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 2e-37 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g25070.1 |
Entrez Gene | 4347070 |