PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g25070.1
Common NameLOC4347070, Os09g0417800, OsJ_29379, OSNPB_090417800, P0014G10.42, P0701F11.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 319aa    MW: 33515.4 Da    PI: 6.4174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g25070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.6e-29143202159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkk++r+aed ++++ tYegeHnh 
  LOC_Os09g25070.1 143 VKDGYQWRKYGQKVTRDNPYPRAYFRCAFApSCPVKKKLQRCAEDRSMLVATYEGEHNHA 202
                       58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-29135202IPR003657WRKY domain
PROSITE profilePS5081125.304138204IPR003657WRKY domain
SuperFamilySSF1182901.01E-24141203IPR003657WRKY domain
SMARTSM007745.0E-33143203IPR003657WRKY domain
PfamPF031061.7E-23144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDDGDGSSS PTDDSAAAGL LPLFSRSPAE DLEEKLRRAM EENARLTRAL DAILAGHHAH  60
QRALLAPSLS PPPPSATARA PSVSTSCAAR EDAAPAVAAA AASTACPSRQ QPPTAEPRPK  120
VRTVRVRADA ADATDANSMA ETVKDGYQWR KYGQKVTRDN PYPRAYFRCA FAPSCPVKKK  180
LQRCAEDRSM LVATYEGEHN HALSTQTTEF VASGCTTSQH AGGSSSSPLP CSISINSSGR  240
TITLDLTNQA GSGSIASCGV EAAAVSGELV TVLSPELRRH LVEEVVQVLK NDAEFVEAVT  300
NAVAARVVDQ IPHIPVHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20138203973WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.480820.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO833202480.0
Expression AtlasQ6EPZ0-
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}.
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g25070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}.
UniProtINDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g25070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678340.0AK067834.1 Oryza sativa Japonica Group cDNA clone:J013121C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610755.10.0WRKY transcription factor WRKY62
SwissprotB8BF910.0WRK62_ORYSI; WRKY transcription factor WRKY62
SwissprotQ6EPZ00.0WRK62_ORYSJ; WRKY transcription factor WRKY62
TrEMBLA0A0E0IJL50.0A0A0E0IJL5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QRG60.0A0A0E0QRG6_ORYRU; Uncharacterized protein
STRINGOS09T0417800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129212834
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.22e-37WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Ryu HS, et al.
    A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.
    Plant Cell Rep., 2006. 25(8): p. 836-47
    [PMID:16528562]
  5. Peng Y, et al.
    OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice.
    Mol Plant, 2008. 1(3): p. 446-58
    [PMID:19825552]
  6. Chen X, et al.
    A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity.
    J. Biol. Chem., 2010. 285(14): p. 10454-63
    [PMID:20118235]
  7. Peng Y,Bartley LE,Canlas P,Ronald PC
    OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
    Rice (N Y), 2010. 3(1): p. 36-42
    [PMID:21961049]
  8. Park CJ,Ronald PC
    Cleavage and nuclear localization of the rice XA21 immune receptor.
    Nat Commun, 2012. 3: p. 920
    [PMID:22735448]
  9. Chujo T, et al.
    OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
    Plant Mol. Biol., 2013. 82(1-2): p. 23-37
    [PMID:23462973]
  10. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  11. Hou Y, et al.
    JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
    BMC Plant Biol., 2015. 15: p. 286
    [PMID:26646110]
  12. Liu J, et al.
    Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense.
    Plant Physiol., 2016. 171(2): p. 1427-42
    [PMID:27208272]