PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g24560.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 301aa    MW: 32301.8 Da    PI: 6.1276
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g24560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.14.4e-46311711128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.......kvkaeekew..yfFskrdkkyatgkrknratksgy 82 
                       lppGfrF+Ptd elv +yL++k+++  ++   +i+++d+y++ePwdL  p        + ++ee+e   yfF++r+ + ++g+r+nrat++gy
  LOC_Os09g24560.1  31 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDLlpPPrcdaaaeE-EEEEEERcgYFFCTRSFRWPSGTRTNRATATGY 121
                       79*************************999.78**************642257765431.112222258************************ PP

               NAM  83 Wkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       Wk+tgkdk+vl+     +g+ vg+kktLvfy+grap+gekt+Wvmheyrl
  LOC_Os09g24560.1 122 WKSTGKDKAVLHGggggGGRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 171
                       ************988877888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5222203IPR003441NAC domain
PROSITE profilePS5100551.15931203IPR003441NAC domain
PfamPF023653.9E-2732171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSARGGVTMA GGGGGDRAPS SSSTAMISRL LPPGFRFRPT DGELVAHYLA RKAADAGFTS  60
AAIRDADLYR AEPWDLLPPP RCDAAAEEEE EEEERCGYFF CTRSFRWPSG TRTNRATATG  120
YWKSTGKDKA VLHGGGGGGG RPVGVKKTLV FYRGRAPRGE KTSWVMHEYR LLHGGAAATA  180
SSSPTPTTVV ARSEWVICRV FVRKTPDGNN DRGTTEHHLP SDDAHLRSSP APANSVDGAG  240
HASCSFFSGA NESMAPSDHF NIGDDMILHG HDEEELLMMN CSSAFDLPEL LDYESFSLDL  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-413120515170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518840.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154791200.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g24560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g24560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641910.0AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.10.0NAC domain-containing protein 79
TrEMBLA2Z1670.0A2Z167_ORYSI; Uncharacterized protein
STRINGOGLUM09G10370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.18e-51NAC domain containing protein 58