PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g24490.1
Common NameLOC4347032, OJ1294_G06.8, Os09g0410700, OSNPB_090410700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 364aa    MW: 37754.9 Da    PI: 5.6113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g24490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14108154354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  LOC_Os09g24490.1 108 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 154
                       78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-12108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-13108157No hitNo description
SuperFamilySSF474591.57E-14109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14109161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-6217264No hitNo description
SuperFamilySSF550216.41E-5217264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MWEGGSHDAA AQLLPWFVGE PAAAAVGGYG GCVDVVGQGG VFGFGFEAAA APVVTRQQRG  60
GAAAAEGSSR GGGGKPAVVS GLLGSLQAEL GRVTAREIMD AKALAASRSH SEAERRRRQR  120
INGHLARLRS LLPNTTKTDK ASLLAEVIEH VKELKRQTTA IAAAAAAGDY HGNDEDDDDA  180
VVGRRSAAAQ QLLPTEADEL AVDAAVDAEG KLVVRASLCC EDRPDLIPDI ARALAALRLR  240
ARRAEITTLG GRVRSVLLIT ADEQQQQHCD DVDDDEDGHR LLLRHGIDGA GAAADDDDEC  300
AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMNYGVHEQ  360
CSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1000990.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976094610.0
Expression AtlasQ6ESL3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g24490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g24490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050930.0AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.10.0transcription factor bHLH30
TrEMBLA0A0E0QRB20.0A0A0E0QRB2_ORYRU; Uncharacterized protein
TrEMBLQ6ESL30.0Q6ESL3_ORYSJ; DNA binding protein-like
STRINGORUFI09G10670.10.0(Oryza rufipogon)
STRINGOS09T0410700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-38bHLH family protein