PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g23230.1
Common NameLOC107278267, OSJNBa0050F15.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 689aa    MW: 79547.6 Da    PI: 7.3971
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g23230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.41.4e-2430119190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfY +YAk  GFsvrk++ k++  +gei++r+fvCs+eg+re ++ + te+ r++ra tr+gC akl++++++ +g+w v++++++H+Hela
  LOC_Os09g23230.1  30 KFYLDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTERIREPRALTRCGCLAKLEIERNEeKGVWFVKEFDNQHTHELA 119
                       6****************99887..9*****************999876788999******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2330119IPR004330FAR1 DNA binding domain
PfamPF105511.9E-33241335IPR018289MULE transposase domain
PROSITE profilePS509668.691519556IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTSSYVSLED QEEYKMMGTV VFSSEEEGYK FYLDYAKGKG FSVRKNNLKR KDGEIIWRQF  60
VCSCEGYREL KHFERTERIR EPRALTRCGC LAKLEIERNE EKGVWFVKEF DNQHTHELAN  120
PDHVAFLGVH RVMSDSKKAQ AVELRMSGLR PFQVMEVMEN NHDELDEVGF VMKDLYNFFT  180
RYEMKNIKGH DAEDVLKYLT RKQEEDAEFF FKYTTDEEGR LRNVFWADAE SRLDYAAFGG  240
VVIFDSTYRV NKYNLPFIPF IGVNHHKSTT IFGCGILSNE SVNSYCWLLE TFLEAMRQVH  300
PKSLITDGDL AMAKAISKVM PGAYHRLCTW HIEENMSRHL RKPKLDELRK LIYESMDEEE  360
FERRWADFKE NGGTGNGQWI ALMYRLREKW AAAYTDGKYL LGMRSNQRSE SLNSKLHTLL  420
KRNMSLMCLV KHVKLCIQGL RKKEAQLDAK STNSVPFCRI DADPLEKDAA RIYTAVVFKK  480
VRAQIRLIAG LEVISGTNQD GSSLYVVGLK DDNEVWDEVR VSFKGQALEG VECHCQKMEC  540
EDIPCSHIFV VVKFLGFDTI PRCCVVDRWT MGAKAAFRSD RNADPNVWSE HMVRYRSLRN  600
LGSDAFFEAA RNPEQTEKAM DFLKGILDKG SSSDENIVAG DFGPMSTHFL SSNQPLEKRV  660
LGPEEIRAKG APSKRRRPFR ETLHTNNQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Expression AtlasQ7XVP7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g23230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g23230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059040.0AP005904.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1040D06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611182.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XVP70.0Q7XVP7_ORYSJ; OSJNBa0050F15.2 protein
STRINGSi015784m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5