PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g23200.1 | ||||||||
Common Name | B1040D06.24, Os09g0395300, RL9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 533aa MW: 54267.3 Da PI: 9.4739 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.6e-32 | 325 | 378 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ LOC_Os09g23200.1 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 378 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-15 | 322 | 379 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 323 | 379 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 325 | 378 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-6 | 326 | 377 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MAMVRELELM TSWSNSMGRH RYPTRILVDS FGHKCSASDK GVWTSCSIRA PLQGRGSFRR 60 GANIRFGSLP SSAAVATSGG GRGGGGVVVG GGGGDPWRRL DGSTASTELS LSPPPAQAAG 120 GGGGGGGADA LPWRHRPSPP SSAVATTSAA AAAALMAPMM LQPLDAGGGA SAPPPPIRGI 180 PIYNGPGGFP FLQPSPTAGD VGHHHHHHPK MGFYSSYHHP STWPSTSPSP LAAPPGAASS 240 PLDPTAAFLS SPHHRMLSAA SGRLNGMLSV SDTLRSYGVP GAAAPGVIGG AHHHHHHLHG 300 GQPFVGALAS RFMPKLPAKR SMRAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD 360 VKDLTLAHVK SHLQMYRTVK STDKPAASSG PADGGSGDEE FAGGGQAASG GGDSMCLRGG 420 GGGGVAAAAF AEHGRSASEG AASSVGGGGG GDMDQSSAGN TSTTRWSNSS RDPWLSSNSC 480 NMDAHRSVGL SSPIENLEPC RSSSSQVSNH ELSSPSLEFT LGRPDWHGAD HD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 326 | 380 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 326 | 380 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 326 | 380 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 326 | 380 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 85 | GGRGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5597 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115479006 | 0.0 | ||||
Expression Atlas | Q0J235 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g23200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Rolled inward leaves like a cylinder at mature stage. Malformed spikelets with low seed sets. Slight delay in heading date. Disordered and irregular arrangement of chloroplast grana lamellae. {ECO:0000269|PubMed:18594992}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g23200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ268748 | 0.0 | FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610960.1 | 0.0 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 0.0 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A0E0QR19 | 0.0 | A0A0E0QR19_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G09960.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 | Representative plant | OGRP570 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 6e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g23200.1 |
Publications ? help Back to Top | |||
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