PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g21180.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 334aa    MW: 35698.5 Da    PI: 4.8144
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g21180.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-1996149456
                       -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  LOC_Os09g21180.1  96 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 149
                       4579*************98**********************************9 PP
2HD-ZIP_I/II1223.1e-3995185291
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
  LOC_Os09g21180.1  95 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQV 185
                       8*****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.55690151IPR001356Homeobox domain
SuperFamilySSF466896.88E-1791153IPR009057Homeodomain-like
SMARTSM003891.8E-1693155IPR001356Homeobox domain
CDDcd000862.23E-1795152No hitNo description
PfamPF000462.1E-1696149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-19100150IPR009057Homeodomain-like
PRINTSPR000313.7E-6122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000313.7E-6131147IPR000047Helix-turn-helix motif
PfamPF021838.2E-12151193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MCSMDDYSGR LVFSSAGAAP PCSAAGAGGG QMLLFGGHGG FVGGSPVMEE AELRRRRRKR  60
PFLTTTHDEL ELQMEDLVDE LYGVDEQGSS SAAARKRRLT AEQVRALERS FEEEKRKLEP  120
ERKSELARRL GIAPRQVAVW FQNRRARWKT KQLELDFDRL RAAHDELLAG RTALAADNES  180
LRSQVILLTE KLQANGKSPS PSPAPAEQTA VPAAPESAKS FQLEEGRRLY DAAGSTTTTN  240
GGGGGVAMPA ARVAAARAAS NDSPESYFAG ARSPPSSSED DCGGAGSDDD YPSSSVLLPV  300
DATLVGDAFE HAVAATVAAD EEAPLNSWEW FWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260LRRRRRKRP
25359RRRRRKR
3143151RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.528060.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g21180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g21180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057020.0AP005702.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0027G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610704.10.0homeobox-leucine zipper protein HOX25
SwissprotA3BYC10.0HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A0E0JAB30.0A0A0E0JAB3_ORYNI; Uncharacterized protein
STRINGONIVA12G12160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-30homeobox 1