PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g20350.1 | ||||||||
Common Name | LOC4346884, OJ1759_F09.23, Os09g0369000, P0564H06.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 292aa MW: 30752.2 Da PI: 6.671 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.6e-21 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g LOC_Os09g20350.1 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 159 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.45E-30 | 109 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-33 | 110 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 110 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-23 | 110 | 169 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 110 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 111 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-15 | 111 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI RDASGSPPVC SQFSPTSPFS FPHAFAYGGG LAQQPELSPA 60 QMHYIQARLH LQRQAAQAGP LGPRAQPMKA SSSSASAAGA AATPPRPQKL YRGVRQRHWG 120 KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DQAAYRLRGD AARLNFPDNA ASRGPLHASV 180 DAKLQTLCQN IAAAKNAKKS SVSASAAATS SAPTSNCSSP SSDDASSCLE SADSSPSLSP 240 SSAATTAETP ATVPEMQQLD FSEAPWDEAA AFALTKYPSY EIDWDSLLAA N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 109 | 167 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 109 | 167 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11944 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117246802 | 0.0 | ||||
Expression Atlas | Q6H5L8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g20350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g20350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005525 | 0.0 | AP005525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0564H06. | |||
GenBank | AP005580 | 0.0 | AP005580.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1759_F09. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612138.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q8H1E4 | 3e-63 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0E0IIH6 | 0.0 | A0A0E0IIH6_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q6H5L8 | 0.0 | Q6H5L8_ORYSJ; AP2-EREBP transcription factor | ||||
STRING | ONIVA09G06980.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g20350.1 |
Entrez Gene | 4346884 |
Publications ? help Back to Top | |||
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