PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g19950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 363aa MW: 37637.6 Da PI: 5.2887 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.5 | 8.3e-37 | 72 | 171 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ae LOC_Os09g19950.1 72 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAE 164 7******************************************************************************************** PP DUF260 94 lallkee 100 la+++++ LOC_Os09g19950.1 165 LAAVQHH 171 ****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.79 | 71 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-33 | 72 | 169 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG 60 GGGGGGVGQS QACAACKYQR RKCNADCPLA RYFPADEQRR FLNAHHLFGV SKIQKTLRDT 120 PPELHADAMQ ALTFEANARA SDPVGGAARV VVELCRQYEM LHAELAAVQH HLKLCRQQHA 180 AAAAAAANDP LVANVDPLAD PAAEMLFAGA VVPNQNDDAM VDAFYADQQT AGDGDQEQYL 240 VKDEALAAQP PPQQPYEYLN YGTAGDEGSS HAWYTGNGGD ADASPPMGLS DQLQQCQIGA 300 APPFDVKPEL PATMEHGGSV FVEQPEQKIL PAAGSSSSAA AHCQLELGCS SNAWKVGTHV 360 IN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-20 | 68 | 172 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-20 | 68 | 172 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53182 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981256 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g19950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g19950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005675 | 0.0 | AP005675.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1001_G09. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611163.2 | 0.0 | protein IAL1 | ||||
TrEMBL | A0A0E0QQE9 | 0.0 | A0A0E0QQE9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G08020.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18293 | 10 | 10 | Representative plant | OGRP5524 | 10 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-25 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g19950.1 |