PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g13575.1 | ||||||||
Common Name | LOC4346672, Os09g0306400, OSJNBa0064I23.18, OSNPB_090306400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 154aa MW: 17147.2 Da PI: 9.0017 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.5 | 8.3e-15 | 29 | 82 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rrk++NRe+ArrsR RK++ ++eL+ v +L+++N++L l+ +++ LOC_Os09g13575.1 29 EKKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLKNQNQQLSMALSLTTQNL 82 679****************************************98887766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-12 | 23 | 79 | No hit | No description |
SMART | SM00338 | 3.8E-16 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.542 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.3E-12 | 29 | 77 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.75E-12 | 31 | 84 | No hit | No description |
CDD | cd14702 | 1.72E-15 | 32 | 80 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSSGTSSGSS QGTRSSRSED DLNLQAQMEK KRKRRKESNR ESARRSRMRK QQHLDELTSQ 60 VNQLKNQNQQ LSMALSLTTQ NLVAVQAQNS VLQTQELELQ SRLCALTDIL MCMNNTSATP 120 TPTIPATTTS ACDIFGASSW NQPPIDLYQY QCF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | KKRKRR |
2 | 29 | 35 | KKRKRRK |
3 | 30 | 35 | KRKRRK |
4 | 31 | 36 | RKRRKE |
5 | 43 | 50 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100450 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115478455 | 0.0 | ||||
Expression Atlas | Q69KN5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g13575.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g13575 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064903 | 0.0 | AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence. | |||
GenBank | AK072360 | 0.0 | AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence. | |||
GenBank | AK098869 | 0.0 | AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence. | |||
GenBank | CT833039 | 0.0 | CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence. | |||
GenBank | CT833040 | 0.0 | CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612149.1 | 1e-109 | bZIP transcription factor 44 | ||||
TrEMBL | A0A0E0QPG2 | 1e-107 | A0A0E0QPG2_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q69KN5 | 1e-107 | Q69KN5_ORYSJ; Os09g0306400 protein | ||||
STRING | ORUFI09G05300.1 | 1e-108 | (Oryza rufipogon) | ||||
STRING | OS09T0306400-01 | 1e-108 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 | Representative plant | OGRP10708 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 6e-07 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g13575.1 |
Entrez Gene | 4346672 |