PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g13570.1
Common NameLOC4346672, Os09g0306400, OSJNBa0064I23.18, OSNPB_090306400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 154aa    MW: 17147.2 Da    PI: 9.0017
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g13570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.58.3e-152982356
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                      e kr rrk++NRe+ArrsR RK++ ++eL+  v +L+++N++L   l+  +++ 
  LOC_Os09g13570.1 29 EKKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLKNQNQQLSMALSLTTQNL 82
                      679****************************************98887766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-122379No hitNo description
SMARTSM003383.8E-162791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.5422992IPR004827Basic-leucine zipper domain
PfamPF001709.3E-122977IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-123184No hitNo description
CDDcd147021.72E-153280No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSSGTSSGSS QGTRSSRSED DLNLQAQMEK KRKRRKESNR ESARRSRMRK QQHLDELTSQ  60
VNQLKNQNQQ LSMALSLTTQ NLVAVQAQNS VLQTQELELQ SRLCALTDIL MCMNNTSATP  120
TPTIPATTTS ACDIFGASSW NQPPIDLYQY QCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934KKRKRR
22935KKRKRRK
33035KRKRRK
43136RKRRKE
54350RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1004500.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154784550.0
Expression AtlasQ69KN5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g13570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g13570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649030.0AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence.
GenBankAK0723600.0AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence.
GenBankAK0988690.0AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence.
GenBankCT8330390.0CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence.
GenBankCT8330400.0CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612149.11e-109bZIP transcription factor 44
TrEMBLA0A0E0QPG21e-107A0A0E0QPG2_ORYRU; Uncharacterized protein
TrEMBLQ69KN51e-107Q69KN5_ORYSJ; Os09g0306400 protein
STRINGORUFI09G05300.11e-108(Oryza rufipogon)
STRINGOS09T0306400-011e-108(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Representative plantOGRP1070849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-07basic leucine-zipper 44