PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g12380.1
Common NameLOC4346644, Os09g0295000, OSJNBa0044K01.19, OSNPB_090295000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 496aa    MW: 52168.8 Da    PI: 6.6384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g12380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.63.4e-21171528125
               NAM   8 hPtdeelvveyLkkkvegkklelee.........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                       hPt++el++ yL++++  ++++ +          +i+++d y ++P dL +     +++ +++ wyfFs+ ++++++g+r+ ra++  +g W+
  LOC_Os09g12380.1  17 HPTEQELISSYLHPRLLLTTTKPAAavaaggvpsFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCWH 109
                       9**************88877333234566777768**************84466666666888********************87744788** PP

               NAM  85 atgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhe 125
                       +    ++v+++ g+ vg ++ + f k+r+++g+  +t W+m e
  LOC_Os09g12380.1 110 SESGVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVE 152
                       *************************99999887558*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.56310176IPR003441NAC domain
PfamPF023656.8E-1217152IPR003441NAC domain
SuperFamilySSF1019411.44E-3017176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MADADADACP AVFASRHPTE QELISSYLHP RLLLTTTKPA AAVAAGGVPS FIHHADAYAA  60
DPADLTARHL PARAADGSRA WYFFSPVRTT TERGTRRARA VESGDGCWHS ESGVRAVVDA  120
AGRRVGHRQF FSFVKKREED GKRVRTGWLM VELGVDNDAA SASSSNELVL CKIYMTPRMP  180
PPSPPSAVTS SAAATMELMP RAPPPSAPSA VTSPAATTME LMAGGVHKRR KISDEIAAAA  240
TPPHPQQQRR QRCVPDNDGS KESSGESSSV VILDDDDDDA DAPEDGGAVR SKLRSDDGVM  300
LADARDDEQH AATSDSMAGT SGGAVTGGGH GKLLPDLNVV ATVAHDDEGR HARGAPRPQD  360
GGTSTTTTMV ASAGAERGST TGHLPAATAG YRRTLMLFLE EEDDDAVEDE QQQQQAPPLP  420
PATSTATTTT RTAAEANVQR QRQPPCCTFV VHPCAVHAKM RHGAAYGCGC RVTGAVRRGG  480
YHLPRRAVHT TTTGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547780.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329919500.0
Expression AtlasQ69LG1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g12380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g12380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058390.0AP005839.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611524.10.0PH domain leucine-rich repeat protein phosphatase 1
TrEMBLA0A0E0QPB70.0A0A0E0QPB7_ORYRU; Uncharacterized protein
TrEMBLQ69LG10.0Q69LG1_ORYSJ; Os09g0295000 protein
STRINGORUFI09G04860.10.0(Oryza rufipogon)
STRINGOS09T0295000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1745799