PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os09g11480.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27817.8 Da PI: 4.6319 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.7e-20 | 102 | 151 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +grW++eIrdp+ + +r++lg+f+ta eAa+a++a +++++g+ LOC_Os09g11480.2 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHGH 151 9*******.**********75....44**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.787 | 101 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-37 | 101 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 102 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-12 | 102 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 102 | 159 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.28E-27 | 104 | 157 | No hit | No description |
PRINTS | PR00367 | 2.7E-11 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDDDDD 60 DGGVSMFPSG AGTMETTTEV APAAAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP 120 VKGARVWLGT FDTAVEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD 180 DDDGVARGNS PASSSAPDRA SACTTSSTVA SGERGDELIL LECCSDDVMD SLLAGFDVSS 240 EPRSVLVWFL QFFVK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 102 | 158 | 6 | 63 | ATERF1 |
3gcc_A | 1e-18 | 102 | 158 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 88 | 96 | RPRRRRRVR |
2 | 90 | 97 | RRRRRVRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.28406 | 0.0 | leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 117233306 | 0.0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os09g11480.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os09g11480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005705 | 0.0 | AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09. | |||
GenBank | AP006758 | 0.0 | AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610635.1 | 1e-177 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0QP69 | 0.0 | A0A0E0QP69_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G04420.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15200 | 13 | 18 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33710.1 | 6e-19 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os09g11480.2 |