PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g11460.2 | ||||||||
Common Name | LOC4346628, Os09g0286600, OsJ_28693, OSNPB_090286600, P0453B09.1, P0663H05.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26038.6 Da PI: 8.4969 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 114 | 161 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 y+G+r+++ +grW++eIrdp+ + r++lg+f+tae+Aa+a++ ++++ LOC_Os09g11460.2 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161 9*******.**********75....44*******************8777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.1E-36 | 113 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 113 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-25 | 114 | 169 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-20 | 114 | 171 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 114 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 114 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRRRVSSSSS SSSSSSPARH HKARRSRRKL AVDEDWEAAF REFLSRDHDD DDDDHDGQHV 60 VVAPLIRGSD KCVHGHEVVA STVGGGASGG RRRADDDDGE RRRRRRREKR SYPYRGIRQR 120 PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP PSPPTPPPPE 180 KPAAERSPST TPTTTTEDSG DSRILIECCS DDLMDSLLAA FDMTTGDMRF WS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 114 | 170 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-18 | 114 | 170 | 6 | 63 | ATERF1 |
3gcc_A | 6e-18 | 114 | 170 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 106 | RRRADDDDGERRRRRRR |
2 | 99 | 107 | ERRRRRRRE |
3 | 100 | 106 | RRRRRRR |
4 | 100 | 107 | RRRRRRRE |
5 | 101 | 109 | RRRRRREKR |
6 | 103 | 108 | RRRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.81099 | 0.0 | flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975362 | 0.0 | ||||
Expression Atlas | Q6EN68 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g11460.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g11460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC090056 | 0.0 | AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence. | |||
GenBank | AK065344 | 0.0 | AK065344.1 Oryza sativa Japonica Group cDNA clone:J013007H05, full insert sequence. | |||
GenBank | AP005705 | 0.0 | AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09. | |||
GenBank | AP006758 | 0.0 | AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | EU847519 | 0.0 | EU847519.1 Oryza sativa Japonica Group clone OsEP3 AP2/ERF domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651344.1 | 1e-166 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0QP67 | 1e-165 | A0A0E0QP67_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6EN68 | 1e-165 | Q6EN68_ORYSJ; AP2/ERF domain protein | ||||
STRING | ORUFI09G04400.1 | 1e-166 | (Oryza rufipogon) | ||||
STRING | OS09T0286600-02 | 1e-166 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 6e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g11460.2 |
Entrez Gene | 4346628 |