PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g11390.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 728aa    MW: 83558.9 Da    PI: 6.7087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g11390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.81.3e-26226321291
              FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                       f+n+YA+ +GFs+++++s k+   krn+e++k+t++C+++gk++++ ++    ++ +r+t++  rt+Ck+ ++v+++ +g w v++l+l HnH
  LOC_Os09g11390.1 226 FFNFYAYLIGFSIVIAHSLKTsdkKRNNEVIKYTYKCNRHGKNQDNATNqvqkKKGTRNTNVLVRTDCKCVMVVREN-NGIWSVIRLDLSHNH 317
                       9****************9988888999******************999966655666779***************99.*************** PP

              FAR1  88 elap 91 
                       +l+p
  LOC_Os09g11390.1 318 NLCP 321
                       **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-26226321IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MEIAEKSRQK ELESAQEKNT MGNPTISTTK DFSSEKQIAK SIQMEESTNP RANLSSAGTN  60
STEIAYGGQM LHEEYALLSL QTELGQQMSY TALMQQVIQS QSPKINLHTN QGRLAEMNYH  120
LQSPIGYSNS MILTTNRCID NFDQAVLEAE QEVQVQITST ENSALEQVNG AVQASIASTE  180
DNAEITDKEN KESAADEEEA DNDEIDSRHI PCEGMQFKTD DEAYTFFNFY AYLIGFSIVI  240
AHSLKTSDKK RNNEVIKYTY KCNRHGKNQD NATNQVQKKK GTRNTNVLVR TDCKCVMVVR  300
ENNGIWSVIR LDLSHNHNLC PPEERKFLYS HKDMTQEEKS LILTLKECNI PTRSMVVILA  360
SLRGGLSSLP YTKKDISNVA SSSNSETKNK DMSQVLRYLR KKEAEDPGFG QMADVGIYMS  420
SLEILEKTST TFTITSKTDE TKKQLYKDFD DIVHNCLTEQ EFETLWPQMI EKYNLQNVKY  480
LQLMFKARAT YIPVYFKNDW FPFIHSTTLS EGTNARRRQD IFGVCCNKPN KTRMEAEKKI  540
PDKYIIDRWR KREKKIATNV ERFTYNGDNL ALRYNILSKK GALISSKACK KVETYNYLLE  600
EMDRLDKHID SMLAQEEQIT TLVDIAEDSM IAEDETITEP NEEEQLQEKE TNEEEEIQDP  660
DQANTKGRKS IRRKRIVEQM IDNNNKKKKR SKGEKNHAKN QQRSNRAAGQ KQQKNRELES  720
SNKTKKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1672689RKRIVEQMIDNNNKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g11390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g11390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900560.0AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence.
GenBankAP0055620.0AP005562.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1190_B07.
GenBankAP0067580.0AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1517079
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-18FAR1-related sequence 5