PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g10980.1 | ||||||||
Common Name | LOC4346617, Os09g0282300, P0603H10.3, P0645D04.28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 307aa MW: 34750.5 Da PI: 8.1925 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 155 | 174 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+Fsr nL+ H+ LOC_Os09g10980.1 155 FACPVCCKTFSRYNNLQMHM 174 78*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.19E-5 | 142 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-6 | 155 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13894 | 8.4E-4 | 155 | 177 | No hit | No description |
PROSITE profile | PS50157 | 10.284 | 155 | 182 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.538 | 259 | 295 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MANPSKDHIF PNQRSLISQS SSPHNSLPKK EEIPLLSLLP SIHDHNKIHG CYKQEKEEEV 60 MEDVDISLQI GLPSPDPNSS VIDFAKSNPL GATATTSQEL DGDDDDDHKV EVEREEEEEA 120 ASDDLCLDYF SMGKLTKGKY WIPTPTQILI GPTHFACPVC CKTFSRYNNL QMHMWGHGSQ 180 YRRGPESLRG TQPAAMLRLP CFCCAAGCRN NVDHPRARPL KDFRTLQTHY KRKHCAKPFA 240 CRKCGKPLAV RGDWRTHEKN CGRRWHCACG SDFKHKRSLK DHIRAFGRDH RERPPPPPPH 300 PLLPLP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.82984 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ENK1 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g10980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g10980 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC090054 | 0.0 | AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence. | |||
GenBank | AP006527 | 0.0 | AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10. | |||
GenBank | AP006727 | 0.0 | AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611093.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q8W031 | 1e-103 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
Swissprot | Q9SVY1 | 1e-103 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A0E0G5A7 | 0.0 | A0A0E0G5A7_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q6ENK1 | 0.0 | Q6ENK1_ORYSJ; Os09g0282300 protein | ||||
STRING | ONIVA02G14580.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 1e-100 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g10980.1 |
Entrez Gene | 4346617 |
Publications ? help Back to Top | |||
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