PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g10840.1 | ||||||||
Common Name | LOC4346610, Os09g0280500, OSNPB_090280500, P0651G05.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 468aa MW: 51343.1 Da PI: 8.1739 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.7e-11 | 181 | 209 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le LOC_Os09g10840.1 181 KTLRRLAQNREAARKSRLRKKAYIQQLES 209 6789***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.4E-6 | 177 | 239 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.795 | 179 | 221 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.5E-8 | 179 | 221 | No hit | No description |
SuperFamily | SSF57959 | 2.06E-7 | 181 | 215 | No hit | No description |
Pfam | PF00170 | 7.5E-9 | 181 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 184 | 199 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.9E-27 | 266 | 338 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MGGSREEDRQ HHNHLPSELP LGFRSSSPTT MIASSSMSKE SSNYDMADFD QASLFLYLDS 60 HDQQSIQEQR QTLNIFPSQP MHVADPAHEA KSAGVAMAML PNGNQLQVLP SHPSKKPDQQ 120 GGQKINSSVP TNPPGPNLPL PNSAKDNKNS SLIKKEGSSS GKGATTSNDP EREGRRTLDP 180 KTLRRLAQNR EAARKSRLRK KAYIQQLESS RIRLSQLEQQ VHVARVQGAM LGAGDQHQGL 240 PSGPSAASLF DLEYGRWVEE HSKLIFQLRA ALNEQMADSQ LQVFVNGAMA QHDELLSLKG 300 AIARADIFHL LCGVWATPAE RCFLWLGGFR PSEAIKVMLK QVEPLSEGQL MSIYELQQAA 360 KGTEDALSHA MDGLQQSLSD TVAAPDVAAA GGFMGHMSLA MNKISAMEDI VRQADGLRQQ 420 TLHKLQHMLT IRQAARCFVA ISDYFHRLRA LSTLWVARPR PEEGPAM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49497 | 0.0 | callus| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992197 | 0.0 | ||||
Expression Atlas | Q6H434 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g10840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g10840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106988 | 0.0 | AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651203.1 | 0.0 | transcription factor TGAL7 isoform X2 | ||||
Swissprot | Q6H434 | 0.0 | TGAL7_ORYSJ; Transcription factor TGAL7 | ||||
TrEMBL | A0A0E0IHD1 | 0.0 | A0A0E0IHD1_ORYNI; Uncharacterized protein | ||||
STRING | OS09T0280500-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-126 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g10840.1 |
Entrez Gene | 4346610 |
Publications ? help Back to Top | |||
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