PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g09630.1
Common NameB1008E06.39, LOC107278917
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 292aa    MW: 33175.2 Da    PI: 6.2273
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g09630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.82.6e-19124189359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 
                       Dgy+WrKYGqK++ +++++rsYYrCt +   gC+++k v++ ++d++      + ++ Y g+H+++
  LOC_Os09g09630.1 124 DGYEWRKYGQKSISKTKHSRSYYRCTNQkgqGCMATKTVQQIENDNSsnsvvkLYNVDYFGKHTCK 189
                       9**************************99999*******999988751211114567799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-21108189IPR003657WRKY domain
SuperFamilySSF1182901.31E-19117190IPR003657WRKY domain
SMARTSM007741.3E-27122190IPR003657WRKY domain
PROSITE profilePS5081115.732124168IPR003657WRKY domain
PfamPF031066.2E-21124189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSANIESFCC IDHRMIIQEM KREHGLLIDL KNHIIPILRF NNVQADHIVH AFDDILCCSN  60
GIISKIQAEV CDGGNSDPGI DKGNGRNALD NMKVFIEDGT VTKNKRRKNA QHTGSVVTAT  120
PDYDGYEWRK YGQKSISKTK HSRSYYRCTN QKGQGCMATK TVQQIENDNS SNSVVKLYNV  180
DYFGKHTCKF GNDMVCPDIV ETDSPKYSSI NDKYASTRLT NHSDDHQPKN DMKPENLFAV  240
PDMSLFSENM WDIIFEDVTM NSTFSLEQEA KDSWIKHQQE STIHLWADEL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-13115189269OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H4S7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g09630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g09630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058290.0AP005829.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1008E06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611479.10.0disease resistance protein RRS1 isoform X1
TrEMBLA0A0E0QNV30.0A0A0E0QNV3_ORYRU; Uncharacterized protein
TrEMBLQ6H4S70.0Q6H4S7_ORYSJ; WRKY transcription factor 64-like protein
STRINGORUFI09G03410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1931588
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-16WRKY DNA-binding protein 64