PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g08460.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 916aa    MW: 103389 Da    PI: 4.9721
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g08460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.71.4e-11342396148
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......t 48 
                       +fYn Y ++vGFs++k+++++s++++ +t++tf+C++ g ++   +k       +
  LOC_Os09g08460.1 342 DFYNGYVYMVGFSTCKASNYHSRKTDIVTRHTFKCNRGGLSAVPYTKkavsnyrD 396
                       6**************************************9887666634444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-9342399IPR004330FAR1 DNA binding domain
PfamPF105517.7E-34456550IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MTVTTTFFSV SGSFSARFSR FGGGGRVAAA VDRTPARPWT TAASASSAEC LLFLMHNRVT  60
EFLIVHNSEY LDSLTVKTAL VQGTETESNE DYGMLFRLSQ EGGITYTNLF QQVSVLPNAI  120
LPGAQVAGGL PLLQNTCGSF MQLLQAPIES ETALYLTSNR FEYDNTFWSF DSHNGYQQND  180
LQNAQTDTSQ MCNSLPQSVA VHPPVASLDM LYDEMQKSSA DVNNQAEMCR SIVQLKASSV  240
EVIYNEMQTQ TIEADACFDQ HFEQATEEDL LSNHAIVTFQ QVEEIEQDKS AENPDQNFSE  300
EDINIFMENE SVTAVQRGGQ EANSAHVPSI NKVFADENEA FDFYNGYVYM VGFSTCKASN  360
YHSRKTDIVT RHTFKCNRGG LSAVPYTKKA VSNYRDCTRR ESGKNDMMQC LDFFEKKRSE  420
DPLFYFRFRT DENNVVKSLF WSDGNIRKFY EMFGDIISFD TTYKTNRCDL PFAPFVGITS  480
HGDNCLFGYA FLQDETSETF QWLFNTFLDC MGGKAPATII TDQDLAMKAA IAIVFPDTVH  540
RNCLFHMLSN ARDKTGRTFN SEDEEVYKDF HDIVTKSQTE AEFEYLWKDF IRRKNLYNVS  600
VSAFLAQYER IAETIYECFK EQESLTRNTV LDTWSEYQFE KQAAKLYTRK IFWAFQRILQ  660
SYTKYDVTVK VRDSIFEVYK SEIHALQDFR KRKYIVVVDT IAEEYECICS RFKKDGILWR  720
LKDKNQELFV PNTLMPAAVL ESNPLLRFNI LSQKMIKLAS DASKTKEKFV YVMNESDKIE  780
DGLKAMSDTA PNDATVHVQD AAATTCGVAS VGAQTGIPMG PSGVGIDAES TKGAVAETET  840
TDMVGIASTS VLLDPKCSNS KGRYKSEPRK KRLIDVIRSK GSVTCSGCGS HDHNIRTCPK  900
KREVKCNRSD EGEEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g08460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g08460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064410.0AP006441.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1279D09.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642362.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLQ53MC80.0Q53MC8_ORYSJ; Transposon protein, putative, unclassified
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2200135
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-45FAR1-related sequence 5