PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g01780.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 649aa    MW: 74569.8 Da    PI: 6.7144
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g01780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.32.2e-22151239290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Yn+YAk+vGFs+++++ +ks ++ge  k  fvC+k g +e++ ++  +k+r+ + + +  Cka+++vk++  ++wev+++++eH+H+l+
  LOC_Os09g01780.1 151 HYNRYAKRVGFSIKINTARKSAKDGERDKVMFVCNKCGPEEKTGEAfPTKKRKISRTRQAACKARMTVKRK-GARWEVIQFVEEHTHPLV 239
                       6***************************************99999977788888888899**********9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-20151239IPR004330FAR1 DNA binding domain
PfamPF105511.6E-16361432IPR018289MULE transposase domain
PROSITE profilePS509668.63502538IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4514535IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDEDR TWMIPAINLD YTFDFETMYT SGDVGSLQAH  60
NVANDEMQVF EANDEMQVFA TNDEMQVFEA NDEMQVFEEM SDHADTMHTS VATGATTATA  120
NTISSQDSGT DDSEVPYLIL TFNSEEEARA HYNRYAKRVG FSIKINTARK SAKDGERDKV  180
MFVCNKCGPE EKTGEAFPTK KRKISRTRQA ACKARMTVKR KGARWEVIQF VEEHTHPLVR  240
KFSLKKFLRS HRAIPKEEKD FITMLHGMNL SAGRIMKLMS ELYGGARNVP YTRKDISNFK  300
SKLGSEYRCR DIPEPIAHFE EIKKDDPNFF YKIQLDKEDR VQNIFWVDGA ARNAYKDFKD  360
CVSFDCTYMT NMYNMPCAPF IGINRHGQSL QLGCGFLRNE KTETFVWLFQ AFLETIEVQE  420
DSRKITVATD QNEFEAEETI PSMWAYYPMK TKALEVYTRP IFNRFQKELI ASTSYKLTRT  480
SENMYLVEPN GGPVRNYGSK AFIVSANVLD RIYNCECCKF ERDGILCCHV LKVMTSDFVG  540
QVSDIPEHYI LPRWTMVKKP ELPLVTSIGE QMQLPPESLK LIRYTNMCTK FTHIAKDASS  600
NEKAYHMALQ RTSSMTDDLA AMKQSRKKQK KAQPAPDKRN FRYPLGIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g01780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g01780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056340.0AP005634.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0584D02.
GenBankAP0059090.0AP005909.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0006G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MEK30.0A0A0E0MEK3_ORYPU; Uncharacterized protein
STRINGOPUNC11G08800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP559546
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-50FAR1-related sequence 5