PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g01140.1 | ||||||||
Common Name | LOC4346364, Os09g0100800, OSJNBb0023E08.28, OSNPB_090100800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GeBP | ||||||||
Protein Properties | Length: 398aa MW: 44577.2 Da PI: 10.337 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 31.3 | 5.8e-10 | 82 | 169 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 fqr ws +De+++L ++ ++++gk +++ ++++++ k + + l +K+r + ++ ++ k+ +++hd+ ++ls+ LOC_Os09g01140.1 82 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRN 166 9************************65..56789999999999865278899********9999998888......556899*********** PP DUF573 95 iWg 97 +W LOC_Os09g01140.1 167 VWV 169 **6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.4E-13 | 82 | 168 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MAPTLPVVPA HGEDKKKKKK KKKPLKPSQE EEEALPLPLP PPDRKRKKAS EPVNSPERAK 60 KKKTATPHEP PSAKQQKRPL PFQRTWSPND EVLILEAMAA HRQEHGKVPT AAELFPVLNG 120 RLDRKRLTYK KLADKLRTFM RRHGRDAKNG PPTQAHDRRL YDLSRNVWVS QTQPPNLSAN 180 ANSNIAGGQP NQHDAMPTAG KAFDKMRDSY PNLTQALLLL VGTDLEKALT AIDETKAQAL 240 DLKVSNLKKE LSEAVMESAT IQSTESSKIP CFPSTKLQPE FGAEIEKNFQ LEHLDEMKGT 300 QVKLARMEQE ILELKQNFLA FQSQQMADSK QQHDKSSAKG IICESSESGL RSIVADNNIL 360 CNTLQKEMVV QQKLSCGKTK EVTSKHRHPQ KLVVFPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 23 | DKKKKKKKKKP |
2 | 14 | 22 | KKKKKKKKK |
3 | 16 | 22 | KKKKKKK |
4 | 43 | 47 | RKRKK |
5 | 45 | 62 | RKKASEPVNSPERAKKKK |
6 | 56 | 62 | ERAKKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53390 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982409 | 0.0 | ||||
Expression Atlas | Q651G2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g01140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g01140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072386 | 0.0 | AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610937.1 | 0.0 | probable transcription factor At2g01370 isoform X5 | ||||
TrEMBL | Q651G2 | 0.0 | Q651G2_ORYSJ; Os09g0100800 protein | ||||
STRING | OS09T0100800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13969 | 11 | 13 | Representative plant | OGRP13620 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 3e-11 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g01140.1 |
Entrez Gene | 4346364 |