PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g45110.1
Common NameAP22, DREB2C, ERF44, Os08g0565200, OSJNBa0044E16.12, P0705A05.128
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 242aa    MW: 26280.3 Da    PI: 6.4938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g45110.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1864114155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++ a+++l+g
  LOC_Os08g45110.1  64 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALDAARAYDSAARALYG 114
                       679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.29765122IPR001471AP2/ERF domain
SMARTSM003803.5E-2965128IPR001471AP2/ERF domain
CDDcd000188.19E-2866120No hitNo description
Gene3DG3DSA:3.30.730.107.4E-2966121IPR001471AP2/ERF domain
PfamPF008475.5E-1266114IPR001471AP2/ERF domain
PRINTSPR003671.4E-96677IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1966121IPR016177DNA-binding domain
PRINTSPR003671.4E-988104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MILIHRYNQA SMEMDIGEGE SCCGRRKQQQ QQNISSSKSR KCCPLRRSRK GCMKGKGGPE  60
NQRCPFRGVR QRTWGKWVAE IREPNRGARL WLGTFNTALD AARAYDSAAR ALYGDCARLN  120
LLLAAATAGA PPAAATPSVA TPCSTNDDSN NSSSTTHQQQ LTTMLQLDDD NYTLQPSSSD  180
QEDFETYVTR LPKAEDFGLE GFQEVPLDVL DEAGGGISIW DLSICPADFM ATAATTTAKS  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1566123361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.309070.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329933520.0
Expression AtlasQ84ZA1-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g45110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g45110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046230.0AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054110.0AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.10.0dehydration-responsive element-binding protein 2C
SwissprotQ84ZA11e-172DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY931e-170A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-011e-171(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.18e-28ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Matsukura S, et al.
    Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
    Mol. Genet. Genomics, 2010. 283(2): p. 185-96
    [PMID:20049613]