PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g44960.1
Common NameLOC107281816, OsJ_28304, P0543D10.36, P0705A05.105
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 137aa    MW: 14994.3 Da    PI: 8.441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g44960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-202072156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                      ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++a+ +++g+
  LOC_Os08g44960.1 20 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 72
                      69********.7*********3...2236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-182080No hitNo description
PfamPF008472.4E-162072IPR001471AP2/ERF domain
PROSITE profilePS5103222.9722179IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-232180IPR016177DNA-binding domain
SMARTSM003801.7E-332185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302180IPR001471AP2/ERF domain
PRINTSPR003673.7E-102233IPR001471AP2/ERF domain
PRINTSPR003673.7E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDGDGGGGWD DQGNGGGETT KYRGVRRRPS GKFAAEIRDS SRQSVRVWLG TFDTAEEAAR  60
AYDRAAYAMR GHLAVLNFPA EARNYVRGSG SSSSSRQHQQ RQVIELECLD DQVLQEMLKG  120
GDDQYRSAAG SKRNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-32161139114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ84ZB4
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g44960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g44960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0046230.0AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883263.17e-96ethylene-responsive transcription factor 14-like
SwissprotQ9LTC56e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0E0QMH02e-94A0A0E0QMH0_ORYRU; Uncharacterized protein
TrEMBLQ84ZB42e-94Q84ZB4_ORYSJ; PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5-like
STRINGORUFI08G26360.13e-95(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.13e-24Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]