PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g44830.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 440aa    MW: 47798.2 Da    PI: 8.694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g44830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.8e-07258280123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk F+r  nL+ H+r H
  LOC_Os08g44830.1 258 HYCQVCGKGFKRDANLRMHMRAH 280
                       68*******************99 PP
2zf-C2H2120.00063350373123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ Cg k+Fs  s+L++H + +
  LOC_Os08g44830.1 350 YVCNRCGrKHFSVLSDLRTHEKHC 373
                       9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.16E-6256283No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6258285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653258285IPR007087Zinc finger, C2H2
SMARTSM003550.0034258280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SMARTSM00355140312345IPR015880Zinc finger, C2H2-like
SMARTSM0035536350376IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MASAERRIRM WWRTAGRPKH LWGRRSMLYM GHSRIYMDRY YDPIELHGQP PPLLMIPGGG  60
GGGGGGGISP YLVQSQHGHG GGVDGMEMEE GGGFMGEQPQ CHPLLYNLSV LKDRVQQLHP  120
LVGLAVAHNA HAHGPLDVSA ADAIIQEIVA AASSMMYAFQ LLCDLGTAPT TAPSQETAAA  180
SAVVVKNNDH AADAGQMEDD HLMQQQWQQN GSRQHDYSSH AHAPPVFHSE TAAPAGATSA  240
TDTIIELDAA ELLAKYTHYC QVCGKGFKRD ANLRMHMRAH GDEYKSKAAL SNPTKLLAKG  300
GDETMAAAAR KYSCPQEGCR WNRRHAKFQP LKSVICAKNH YKRSHCPKMY VCNRCGRKHF  360
SVLSDLRTHE KHCGDHRWLC SCGTSFSRKD KLIGHVSLFA GHQPVMPLDA PRAGKRQRSS  420
SASVAGNIDD TTGIGMGAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.516570.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329733080.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g44830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g44830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0E0QMF70.0A0A0E0QMF7_ORYRU; Uncharacterized protein
STRINGORUFI08G26260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein