PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g44050.4 | ||||||||
Common Name | LOC4346276, OJ1125_C01.21, Os08g0554400, OSJNBb0011H15.47, OSNPB_080554400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 549aa MW: 56663.1 Da PI: 9.3848 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H LOC_Os08g44050.4 70 FVCEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ LOC_Os08g44050.4 146 WKCDKCNKRYAVQSDWKAHSKTC 168 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.71E-8 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-6 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0041 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.5E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 134 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.71E-8 | 141 | 166 | No hit | No description |
SMART | SM00355 | 110 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MAAASSAHYF GLGEPQMQQQ QQQPPLQNNA AAPVAATPPP KKKRNQPGNP NPDAEVVALS 60 PHTLLATNRF VCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNPKETRRRV YLCPEPSCVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CNKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SGRIMPPMGA ALYAAAGAGM AIGGLTGMAA SHQLQPFQDH 240 SSAITTAANA AAQFDHLMAT SSAAAGSPAF RAAQPTSSSS SPFYLGGGGD DGQAHTSLLH 300 GKPAFHGLMQ LPEQQGSNGG GLLNLSYFSG GNGGHHHHHQ EGRLVFPDQF NGVAAGNGAR 360 AGSGEHGNSG NNADSGSIFS GNMMGGGGGF SSLYSSSDQT VPPPQMSATA LLQKAAQMGA 420 TTSSGGAGSV NSLLRGLGSG GGGGALNGKP AGAAGFIMSG ESSSRSTASQ TAENESQLRE 480 LMMNTLSATG GGTGAGTVFV GGGFPGVDDG KLSTRDFLGV SGGAPGLQLR HGGAAGMGMA 540 GSLDQEMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 142 | 204 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 142 | 204 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.61536 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632379 | 0.0 | ||||
Expression Atlas | Q6Z3F1 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g44050.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g44050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072128 | 0.0 | AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence. | |||
GenBank | AK099830 | 0.0 | AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650033.1 | 0.0 | protein indeterminate-domain 6, chloroplastic | ||||
Refseq | XP_025883278.1 | 0.0 | protein indeterminate-domain 6, chloroplastic | ||||
Refseq | XP_025883279.1 | 0.0 | protein indeterminate-domain 6, chloroplastic | ||||
Refseq | XP_025883280.1 | 0.0 | protein indeterminate-domain 6, chloroplastic | ||||
Refseq | XP_025883281.1 | 0.0 | protein indeterminate-domain 6, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-120 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | Q6Z3F1 | 0.0 | Q6Z3F1_ORYSJ; Os08g0554400 protein | ||||
STRING | OS08T0554400-02 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-109 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g44050.4 |
Entrez Gene | 4346276 |
Publications ? help Back to Top | |||
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