PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g43410.1
Common NameOJ1112_E06.1, P0544G09.17
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SRS
Protein Properties Length: 303aa    MW: 30689.8 Da    PI: 8.4242
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g43410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022204.9e-68892293154
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                        gt+sCqdCGnqakkdC+h RCRtCCksrgfdCathvkstWvpaakrrerq+ la+a         +++skr+r++  ++++++++ ++ss+e
  LOC_Os08g43410.1  89 GGTISCQDCGNQAKKDCTHLRCRTCCKSRGFDCATHVKSTWVPAAKRRERQNLLASA---------AESSKRPRDS--AAAATSTTPTTSSGE 170
                       5899***********************************************999986.........6778999997..6666777788899** PP

            DUF702  96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       +++++  +++P+evsseavfrcvr++ v+++++e+aYqt+vsigGhvfkGiL+d G+e+
  LOC_Os08g43410.1 171 QQQMMVGERFPREVSSEAVFRCVRLGPVEEADAEVAYQTTVSIGGHVFKGILHDVGPEH 229
                       *********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-5991228IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.0E-2793135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.2E-23179227IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAGFPLGGGG GRHGRDDHHR PPVNPTDSAA AFLYPSTASR GGFQLWQQQP PPAAHPFYAQ  60
NIIRFADDPA APPSSRGGRG GGPGGSGGGG TISCQDCGNQ AKKDCTHLRC RTCCKSRGFD  120
CATHVKSTWV PAAKRRERQN LLASAAESSK RPRDSAAAAT STTPTTSSGE QQQMMVGERF  180
PREVSSEAVF RCVRLGPVEE ADAEVAYQTT VSIGGHVFKG ILHDVGPEHS SGGGGGMGGR  240
HAAAGEAGSS PSTAAAPHGG GEGGSSGVAA AAAAVSSSAV VMDPYPTPGP FGGAHFFHGH  300
PR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1011950.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6YT10
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g43410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g43410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047040.0AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBankAP0062650.0AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648772.10.0protein SHI RELATED SEQUENCE 1
TrEMBLQ6YT100.0Q6YT10_ORYSJ; Putative lateral root primordia (LRP1)
STRINGORUFI08G25170.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-49Lateral root primordium (LRP) protein-related