PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os08g43200.1 | ||||||||
Common Name | DREB1J, ERF28, LOC4346219, OJ1323_A06.7, Os08g0545400, Os08g0545500, OsJ_027024, P0623F08.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 24470.2 Da PI: 5.6332 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.5e-19 | 43 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ + grWv+e+r+p g + r ++g+f+taeeAa+a++aa+++l g LOC_Os08g43200.1 43 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 95 579******************9...5445***********************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-14 | 43 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-28 | 44 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-21 | 44 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 44 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-18 | 44 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-5 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.38E-19 | 57 | 105 | No hit | No description |
PRINTS | PR00367 | 2.6E-5 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MEKNTTAMGQ LMSSSATTAA TATGPASPKR PAGRTKFQET RHPVFRGVRR RGRAGRWVCE 60 VRVPGSRGDR LWVGTFDTAE EAARAHDAAM LALCGASASL NFADSAWLLH VPRAPVASGH 120 DQLPDVQRAA SEAVAEFQRR GSTAATATAT SGDAASTAPP SSSPVLSPND DNASSASTPA 180 VAAALDHGDM FGGMRTDLYF ASLAQGLLIE PPPPPTTAEG FCDDEGCGGA EMELWS* |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q0J3Y7 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os08g43200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os08g43200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004163 | 0.0 | AP004163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1323_A06. | |||
GenBank | AP004632 | 0.0 | AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649414.1 | 1e-170 | dehydration-responsive element-binding protein 1J | ||||
Swissprot | Q0J3Y7 | 1e-171 | DRE1J_ORYSJ; Dehydration-responsive element-binding protein 1J | ||||
TrEMBL | A0A0E0AYG6 | 1e-167 | A0A0E0AYG6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G23770.1 | 1e-168 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP15392 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 9e-22 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os08g43200.1 |
Entrez Gene | 4346219 |
Publications ? help Back to Top | |||
---|---|---|---|
|